Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120083.Seq
(760 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74472-2|CAA98945.1| 188|Caenorhabditis elegans Hypothetical pr... 59 3e-09
Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical pr... 30 2.1
AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical... 29 3.6
Z67882-6|CAA91804.1| 406|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z50797-10|CAA90677.1| 406|Caenorhabditis elegans Hypothetical p... 29 4.7
U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domai... 29 4.7
U61950-7|AAL02467.1| 395|Caenorhabditis elegans Nuclear hormone... 28 6.3
U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 28 6.3
U61950-5|AAL02466.1| 576|Caenorhabditis elegans Nuclear hormone... 28 6.3
U28731-5|AAA68299.1| 125|Caenorhabditis elegans Hypothetical pr... 28 6.3
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 28 6.3
U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone... 28 6.3
U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone... 28 6.3
U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone... 28 6.3
AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 28 6.3
AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 28 6.3
AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 28 6.3
AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear recep... 28 6.3
>Z74472-2|CAA98945.1| 188|Caenorhabditis elegans Hypothetical
protein F23H12.2 protein.
Length = 188
Score = 59.3 bits (137), Expect = 3e-09
Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Frame = +3
Query: 126 GNHKNNVRYSCRNCGNTVLGLLCIL*PAKAQGSAVQKEVERAKLNAQQNAS-----RSRT 290
G +K+NV + G LG CI K + K+ R K AQ A R
Sbjct: 7 GFNKSNVVLAAGIAGAAFLGY-CIYFDHKRINAPDYKDKIRQKRRAQAGAGGMAPRRPAA 65
Query: 291 LGGPV-PDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSVLQ 467
G PD+ D MQRFFLQ++Q H+ AV +CG+++QLLS+ Q
Sbjct: 66 AGNDAAPDVTDPSQMQRFFLQEVQLGEELMAAGNVDEGAVHIANAVMLCGESQQLLSIFQ 125
Query: 468 QTMPAPIFHLLLK 506
QT+ F +++
Sbjct: 126 QTLSEDQFRAVVQ 138
Score = 47.6 bits (108), Expect = 1e-05
Identities = 18/44 (40%), Positives = 30/44 (68%)
Frame = +1
Query: 121 MMEITRTTLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRER 252
++ ++ + +A GIAG FLGYC+YFD +R P +K K+R++
Sbjct: 5 ILGFNKSNVVLAAGIAGAAFLGYCIYFDHKRINAPDYKDKIRQK 48
>Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical
protein F18H3.4 protein.
Length = 459
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -2
Query: 432 KQLQPARDVRLQLQDHLQPATLRRVESVARKISA*LHDRSCLEQVLRGYETSKHFVVHLA 253
KQL RD R++ +DHL L E R +SA D L + + +K + LA
Sbjct: 93 KQLDLERDCRIRNKDHLDRLLLEHQERYKRNLSA--RDEQALVTEIDALKRNKKLLESLA 150
Query: 252 SLS 244
++
Sbjct: 151 EIT 153
>AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical
protein C15F1.2 protein.
Length = 801
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -3
Query: 422 SLPEMFDSSFKITCSQQLFAELNLLQEKSLH 330
SL + ++SF+ + S++ F + NL+QEK H
Sbjct: 683 SLRRLLNTSFEYSKSRECFHDANLIQEKCTH 713
>Z67882-6|CAA91804.1| 406|Caenorhabditis elegans Hypothetical
protein F22E10.5 protein.
Length = 406
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 451 CLVYFSKLCQLQSSICFLRT 510
CLV+FS + L+S CFL+T
Sbjct: 375 CLVFFSIIGNLKSDFCFLKT 394
>Z50797-10|CAA90677.1| 406|Caenorhabditis elegans Hypothetical
protein F22E10.5 protein.
Length = 406
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 451 CLVYFSKLCQLQSSICFLRT 510
CLV+FS + L+S CFL+T
Sbjct: 375 CLVFFSIIGNLKSDFCFLKT 394
>U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domain
protein protein 1 protein.
Length = 709
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 469 KLCQLQSSICFLRTARSFRTPPILDEGEEQRNAGRRCRIKNC---VFEEMKVKHGGHN 633
K C L CF TA ++TPP+ E G C +NC + ++ K+ HN
Sbjct: 572 KDCSLPQMNCFTHTASHWKTPPLWPE-----ELGEFCFCQNCNNNTYWCLRTKNETHN 624
>U61950-7|AAL02467.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform c protein.
Length = 395
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 541 DEGEEQRNAGRRCRIKNCVFEEMKVKH 621
D E RN R CR++NC+ M KH
Sbjct: 9 DITNESRNRCRACRLRNCLEGGMNPKH 35
>U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform a protein.
Length = 528
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 541 DEGEEQRNAGRRCRIKNCVFEEMKVKH 621
D E RN R CR++NC+ M KH
Sbjct: 142 DITNESRNRCRACRLRNCLEGGMNPKH 168
>U61950-5|AAL02466.1| 576|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform b protein.
Length = 576
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 541 DEGEEQRNAGRRCRIKNCVFEEMKVKH 621
D E RN R CR++NC+ M KH
Sbjct: 190 DITNESRNRCRACRLRNCLEGGMNPKH 216
>U28731-5|AAA68299.1| 125|Caenorhabditis elegans Hypothetical
protein F12A10.6 protein.
Length = 125
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = -3
Query: 230 NSGSLRLCWS----KYTQ*PKNSVPAI 162
NSG+L +CW ++ P+NS+PAI
Sbjct: 70 NSGNLPICWKFQFRQFADLPENSIPAI 96
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 550 EEQRNAGRRCRIKNCV 597
+EQRNA R CR+K C+
Sbjct: 68 KEQRNACRSCRLKECI 83
>U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform d protein.
Length = 446
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 550 EEQRNAGRRCRIKNCV 597
+EQRNA R CR+K C+
Sbjct: 76 KEQRNACRSCRLKECI 91
>U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform a protein.
Length = 448
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 550 EEQRNAGRRCRIKNCV 597
+EQRNA R CR+K C+
Sbjct: 76 KEQRNACRSCRLKECI 91
>U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform e protein.
Length = 450
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 550 EEQRNAGRRCRIKNCV 597
+EQRNA R CR+K C+
Sbjct: 76 KEQRNACRSCRLKECI 91
>AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 525
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 541 DEGEEQRNAGRRCRIKNCVFEEMKVKH 621
D E RN R CR++NC+ M KH
Sbjct: 139 DITNESRNRCRACRLRNCLEGGMNPKH 165
>AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 534
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 541 DEGEEQRNAGRRCRIKNCVFEEMKVKH 621
D E RN R CR++NC+ M KH
Sbjct: 148 DITNESRNRCRACRLRNCLEGGMNPKH 174
>AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 527
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 541 DEGEEQRNAGRRCRIKNCVFEEMKVKH 621
D E RN R CR++NC+ M KH
Sbjct: 141 DITNESRNRCRACRLRNCLEGGMNPKH 167
>AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear receptor
NHR-21a protein.
Length = 458
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 550 EEQRNAGRRCRIKNCV 597
+EQRNA R CR+K C+
Sbjct: 88 KEQRNACRSCRLKECI 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,954,607
Number of Sequences: 27780
Number of extensions: 314136
Number of successful extensions: 931
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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