Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120082.Seq
         (746 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    25   0.85 
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    25   0.85 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.1  

>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 230 HNIKREKDYSKHKKFVYWPKDTNALVPLV 316
           +++ R ++  K  KF +WP   NAL+ L+
Sbjct: 35  YSLVRVENGKKVFKFAWWPLTRNALLVLI 63


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 230 HNIKREKDYSKHKKFVYWPKDTNALVPLV 316
           +++ R ++  K  KF +WP   NAL+ L+
Sbjct: 35  YSLVRVENGKKVFKFAWWPLTRNALLVLI 63


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 204 YECESRFRRTNRNIVVPANN*EQYKNLKFY 115
           Y+CE   R   +    P N+ EQY N  +Y
Sbjct: 64  YDCEGVIRHHGQWNYSPDNHFEQYPNPTYY 93


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,505
Number of Sequences: 336
Number of extensions: 3669
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)