Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120082.Seq
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0110 - 17357323-17357403,17357487-17357595,17357737-173579...    34   0.10 
11_06_0141 + 20559828-20559986,20560074-20560281,20560375-205604...    30   1.7  
11_04_0055 + 12935763-12936287                                         30   2.2  

>03_04_0110 -
           17357323-17357403,17357487-17357595,17357737-17357906,
           17358503-17358649,17358767-17358925,17359410-17359469,
           17359659-17359705,17359786-17359888,17362640-17363080
          Length = 438

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
 Frame = +3

Query: 30  VAVINMDHGNFMIEKEISYSINFSQDLLYKILNSYI---VPNYSLAQQYFDLYDENGFRT 200
           + V+N  H  F+ E  ++Y +++ +  +Y  ++  I      +SL Q Y DL+D+     
Sbjct: 216 IEVVNRLHKEFVHETLLNYGVHYDKTWIYDKIHHEINQFCSAHSLQQVYIDLFDQIDETM 275

Query: 201 RIPIQSACNNI-----ISSVKKTIPN 263
           +  IQ  C        I SV+ T PN
Sbjct: 276 KEAIQRDCTRYAPGIEIISVRVTKPN 301


>11_06_0141 +
           20559828-20559986,20560074-20560281,20560375-20560433,
           20560532-20560590,20560809-20560886,20560974-20561073,
           20561174-20561245,20561327-20561434,20561677-20561730,
           20562847-20563296
          Length = 448

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
 Frame = +2

Query: 179 RRKRLSHSYTYSERLQ*HNIKREKDYSKHKKFVYWPK--DTNALVPLVWRESKEIKLPYK 352
           +RK  + +  +S RLQ    KR++ Y K ++ ++  +   TN        +  EIKL  K
Sbjct: 198 QRKNAAAAAGFSFRLQERAEKRKEFYQKLEEKIHAKELEQTNLQAKSKESQEAEIKLLRK 257

Query: 353 TLSHNLSKIIKVYVYQHDKIEIK 421
           +L+   + +   Y  Q  K+E+K
Sbjct: 258 SLTFKATPMPSFYKEQPPKVELK 280


>11_04_0055 + 12935763-12936287
          Length = 174

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 472 DGEQDIQTADFVENGNASSETLQNSQ 549
           DG Q +Q  +F +NGNAS E   N Q
Sbjct: 148 DGAQGLQGGNFNQNGNASQEFFNNFQ 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,316,180
Number of Sequences: 37544
Number of extensions: 335807
Number of successful extensions: 816
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)