Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120082.Seq
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.43 
SB_34114| Best HMM Match : Transthyretin (HMM E-Value=1.1e-13)         31   0.99 
SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                28   7.0  
SB_59662| Best HMM Match : efhand (HMM E-Value=2.2)                    28   9.2  
SB_41104| Best HMM Match : p450 (HMM E-Value=0)                        28   9.2  

>SB_53691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 502

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 266 KKFVYWPKDTNALVPLVWRESKEI---KLPYKTLSHNLSKII 382
           +K V WP+ T+  +PL W + KE+   + P K    NL K I
Sbjct: 180 RKLVKWPRITSMCLPLQWSQWKEVDGLEAPKKITGTNLRKYI 221


>SB_34114| Best HMM Match : Transthyretin (HMM E-Value=1.1e-13)
          Length = 626

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 251 DYSKHKKFVYWPKDTNALVPL--VWRESKEIKLPYKTLSHNLSKI 379
           D  ++ +F+Y  KD+N  +PL  ++ +    + P  T S  LSK+
Sbjct: 228 DQERNMRFIYSKKDSNTTIPLWKIYEKKGNPRCPVATFSKYLSKL 272


>SB_16906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 462 NKSMSLFEKYTCSNLISILSCW*TY 388
           NK ++LF+ Y   NL SI  CW  Y
Sbjct: 173 NKMLNLFQVYMIINLPSIKQCWLRY 197


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 374 YSSCAKESCKAV*FLCSLSTPTAPTRW 294
           Y+ CA+ SC+A  F C  S    P  W
Sbjct: 859 YAGCAEWSCRASEFRCQASRKCIPLSW 885


>SB_59662| Best HMM Match : efhand (HMM E-Value=2.2)
          Length = 318

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 254 YSKHKKFVYWPKDTNALVPLV--WRESKEIKLPYKTLSHNLSKII 382
           +S H    Y+ KD       V  WRE + I  P+K +   +S +I
Sbjct: 77  FSSHMLLEYYEKDDRMKTTQVPQWRELRNISSPHKEVIRRISPLI 121


>SB_41104| Best HMM Match : p450 (HMM E-Value=0)
          Length = 515

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -2

Query: 688 GDMFCASVNASMSAIMWHITFSXXXXXXXRQIH--IRDVCGP 569
           GDMF A    + +++ W ITF         +IH  +  V GP
Sbjct: 316 GDMFIAGYETTSTSLRWAITFLVNYPEYQEEIHQQLDQVIGP 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,977,779
Number of Sequences: 59808
Number of extensions: 419089
Number of successful extensions: 1038
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)