Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120082.Seq
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49887-5|CAE17773.1|  184|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z92838-10|CAB07412.2|  312|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z92832-9|CAB07377.2|  312|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.      28   8.1  

>Z49887-5|CAE17773.1|  184|Caenorhabditis elegans Hypothetical
           protein F09B9.5 protein.
          Length = 184

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +2

Query: 254 YSKHKKFVY----WPKDTNALVPLVWRESKEI 337
           Y +H+K+ Y    W   TN    ++WR +KEI
Sbjct: 82  YQEHEKYEYETPGWQTGTNYFTQVIWRSTKEI 113


>Z92838-10|CAB07412.2|  312|Caenorhabditis elegans Hypothetical
           protein F31D4.1 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 745 SCSNFRGAILSINVVSGTNG 686
           SC +FR  IL   V+SGTNG
Sbjct: 27  SCQDFRQIILERGVLSGTNG 46


>Z92832-9|CAB07377.2|  312|Caenorhabditis elegans Hypothetical
           protein F31D4.1 protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 745 SCSNFRGAILSINVVSGTNG 686
           SC +FR  IL   V+SGTNG
Sbjct: 27  SCQDFRQIILERGVLSGTNG 46


>Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical
           protein F32H2.3 protein.
          Length = 824

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 165 YFDLYDENGFRTRIPIQSACNNIISSVKKTIPNTK 269
           Y DL+DEN FRT   + +A +   S  ++ +P  K
Sbjct: 664 YIDLHDENNFRTSSSLSTA-STTSSFQRRILPGAK 697


>AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.
          Length = 824

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 165 YFDLYDENGFRTRIPIQSACNNIISSVKKTIPNTK 269
           Y DL+DEN FRT   + +A +   S  ++ +P  K
Sbjct: 664 YIDLHDENNFRTSSSLSTA-STTSSFQRRILPGAK 697


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,570,215
Number of Sequences: 27780
Number of extensions: 335349
Number of successful extensions: 980
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)