Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120081.Seq
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    29   0.98 
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    27   3.0  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    26   5.2  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   5.2  

>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = +2

Query: 260 FVVVFPGVLKTYINCDLIEKTT----IILLFLKVL*AVSKRTFQSLFSI 394
           F+ + PGV+KT +N D I+K T     +L +LK +  + + +  S+  +
Sbjct: 183 FISIHPGVVKTDMNADAIKKFTETSPEMLTYLKKVTIIPEESVSSMLKV 231


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -3

Query: 299 LYKFLIHLEIPQQTVFAIF---LF*IQYFDKI--KNVYFFLSFWGKLGRM*GNLERDWKN 135
           L KF   L +P  T+F IF   L+ ++ FD+I   ++  F   W KL     N++ D +N
Sbjct: 490 LTKFKFDLPVPHLTLFRIFLQGLYALRDFDQISTSSLQTFTMLWKKLSTS-LNMKEDAQN 548


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/49 (22%), Positives = 21/49 (42%)
 Frame = +1

Query: 514 QVL*ESSAVCPNLPQDPNLPHVMVPKTITQHQSTNFNESITVNKTDSYI 660
           ++L E+  V  ++P D N     +   +  H +   N     NK+  Y+
Sbjct: 178 KILEEAGLVAVDIPADGNCLFASISHQLNYHHNVKLNSQALRNKSADYV 226


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -2

Query: 288 FNTPGNTTTNGICNILILNTIFRQNKKCIF 199
           ++ P N T++ I  IL  +TIF+ ++ C++
Sbjct: 366 WSLPANQTSDSISKILTGSTIFQGHEDCVW 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,342,779
Number of Sequences: 5004
Number of extensions: 74263
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)