Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120081.Seq
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768...    33   0.19 
02_05_0003 - 24867053-24867145,24867264-24867437,24867673-248677...    28   9.5  

>12_01_0830 -
           7678038-7678444,7678996-7680943,7681231-7681983,
           7682701-7682824,7683590-7683723
          Length = 1121

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 181 ENWDVCRVIWNETGKIRDEKTQNWNAKRQNREGLLGLSLIS 59
           E W V + I N+  ++ DE TQN + +R  R+  LG+ + S
Sbjct: 854 ECWSVAQAIVNDDCEVEDEVTQNQDKERMARDDNLGVDMCS 894


>02_05_0003 -
           24867053-24867145,24867264-24867437,24867673-24867735,
           24868108-24868198,24869579-24869673,24870471-24870668,
           24871475-24871648,24872335-24872439,24872645-24872737,
           24873688-24873690,24874776-24874844,24875208-24875265,
           24875810-24875918,24876603-24876714,24877992-24878204,
           24878214-24878546
          Length = 660

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 744 NDKEPFKAIRLHFTFFHNSKLTIDEECFDITVGLIYCNRLIKI 616
           +D+E  +AIRL       +   + +  FD  + LI  NRL ++
Sbjct: 69  SDRESIRAIRLKKVLLLANPFLLPQSVFDTAIRLIGINRLCRV 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,537,997
Number of Sequences: 37544
Number of extensions: 363479
Number of successful extensions: 768
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)