Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120081.Seq
         (778 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)                  31   1.0  
SB_43334| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   2.9  
SB_51669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)                    29   3.2  
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   3.2  
SB_41988| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   4.2  
SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)             29   4.2  
SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)                 28   7.3  
SB_2051| Best HMM Match : LicD (HMM E-Value=1.7e-07)                   28   7.3  
SB_50410| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.7  

>SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)
          Length = 943

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 194 GKNIHFLF-CRNIVFKIRILQIPFVVVFPGVLKTYIN 301
           GK++  +F CRN     R+L+  FV+VF  V KT ++
Sbjct: 660 GKSVSMIFYCRNRCIATRVLKTRFVLVFCSVSKTILS 696


>SB_43334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 25.8 bits (54), Expect(2) = 2.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 131 PNFSSLVPNYPTYVPIFPKKKGK 199
           P  S + PN P  +P FP+  GK
Sbjct: 353 PPMSGIFPNGPLNIPPFPETAGK 375



 Score = 22.2 bits (45), Expect(2) = 2.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 95  LSFGVPILCFLVPNFSSLVP 154
           L  G+P+     PNFSS++P
Sbjct: 308 LHSGIPMPQMPFPNFSSMLP 327


>SB_51669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 544 PNLPQDPNLPHVMVPKTI-TQHQSTNFNESI 633
           PNLP  P LP+++VP ++  ++  T F+ S+
Sbjct: 237 PNLPPKPTLPNIIVPSSLFRENLKTIFHSSL 267


>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
          Length = 885

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 204 IFFPFFLGKIGTYVG*FGTRLEKLGTRKHKIGT 106
           I+F  +LG +GT++G  GT L  LGT    +GT
Sbjct: 650 IYFGTWLGYLGTWLGYLGTWLGYLGTWLGYLGT 682


>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1246

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 139 KIRDEKTQNWNAKRQNREGLLGLSLISYN 53
           K++  +T  W  K Q+R   LG+++I YN
Sbjct: 326 KVKPVQTGVWGIKDQSRRACLGMNIIQYN 354


>SB_41988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +1

Query: 88  PYFVFW---RSNF--VFSRP*FFQSRSKLPYIRPNFPQKERKKYTFFILSKYCI*NKNIA 252
           PYF  W   R+++   F       ++  L +IR +  +  +KK+ F  +S Y   + N++
Sbjct: 100 PYFTRWPQKRTSYKITFLASLLVATKCTLRWIRVDESRIRKKKFAFSEISGYVWTSVNVS 159

Query: 253 NTVC 264
           NT+C
Sbjct: 160 NTLC 163


>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1457

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 399  LTNFWDQLNSYLVLP*LTWLFFYTLINMNINKIR*IPATGTLRIFRSLSQFTPGSQFTPC 578
            L + WD L+ +LV+  ++W+        +++        GTLR+FR+L    P  ++   
Sbjct: 1024 LRDGWDVLDGFLVM--VSWIDIIVTYTSHVSP----EVLGTLRVFRALRTLRP-LRYRLL 1076

Query: 579  HGT 587
            HGT
Sbjct: 1077 HGT 1079


>SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)
          Length = 822

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 202 IFSFLFGENWDVCRVIWNETGKIRDEKTQNW 110
           IFS++ G  W  C+ +W+E  +       NW
Sbjct: 385 IFSWILGVAWSECKQVWHEGARRYFSSGWNW 415


>SB_30893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 170 RM*GNLERDWKN*GRENTKLERQK 99
           RM G  +R+WKN   EN + ERQ+
Sbjct: 69  RMEGQSDREWKNRKTENGRTERQR 92


>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
          Length = 420

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 565 WDPGVNWDKLRKILKVP-VAGIYLILFMFIFINV*KKSQVNYGSTKYELSWSQKF-VKL 395
           ++ G    KLRK +KV    GI + +F+  ++     S V+Y ST  ++ W   F VKL
Sbjct: 188 FNQGTLQTKLRKDIKVAKTIGIMIAIFVIGWLPFFALSLVSYTSTSSDIPWHAVFAVKL 246


>SB_2051| Best HMM Match : LicD (HMM E-Value=1.7e-07)
          Length = 328

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 121 FSRP*FFQSRSKLPYIRPNFPQKER 195
           F R  FFQ+    P++RP  P KER
Sbjct: 188 FPRDVFFQNSESDPFLRPGDPAKER 212


>SB_50410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 576

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -2

Query: 675 DEECFDITVGLIY---CNRLIKISTLMLCYGFRY 583
           D+ C D  VG  Y      ++  ST+MLCY  RY
Sbjct: 316 DDVCCDYLVGYWYYWLIGGIVIFSTIMLCYWVRY 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,810,399
Number of Sequences: 59808
Number of extensions: 470644
Number of successful extensions: 1079
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)