Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120081.Seq
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67737-6|CAA91540.3|  399|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AL132853-8|CAB60436.2|  511|Caenorhabditis elegans Hypothetical ...    28   8.6  

>Z67737-6|CAA91540.3|  399|Caenorhabditis elegans Hypothetical
           protein T01H10.7 protein.
          Length = 399

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 556 GVNWDKLRKILKVPVAGIYLILFMFIFI 473
           GV  DK+ K   +P+ GIY+I+ +FI I
Sbjct: 306 GVMADKIPKTGSIPLLGIYIIVNLFIMI 333


>Z78200-6|CAB01585.2|  524|Caenorhabditis elegans Hypothetical
           protein T04H1.8 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = -1

Query: 538 LRKILKVPVAGIYLILFMFIFINV*KKSQVNYGSTKYELSWSQK 407
           L +++   +A +++ LF+F+F+N  +K   NY   KY LS+S K
Sbjct: 485 LVRLIDSSIALVFM-LFIFVFVNHFRK---NYVGFKYPLSFSTK 524


>AL132853-8|CAB60436.2|  511|Caenorhabditis elegans Hypothetical
           protein Y80D3A.5 protein.
          Length = 511

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 67  VTTLTSLPYFVFWRSNFVFSRP*FFQSRSKLPYIRPNFPQKERKKYTFF 213
           V T+T + +F F ++ F++++   FQ  + LP I  NF Q       FF
Sbjct: 10  VLTITWIIHFAFRKAKFIYNKLTVFQGPAALPLI-GNFHQFHFSPEEFF 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,907,540
Number of Sequences: 27780
Number of extensions: 394415
Number of successful extensions: 942
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)