Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120081.Seq
         (778 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30090.1 68414.m03678 kelch repeat-containing F-box family pr...    29   4.5  
At1g76110.1 68414.m08838 high mobility group (HMG1/2) family pro...    28   6.0  

>At1g30090.1 68414.m03678 kelch repeat-containing F-box family
           protein similar to SP|O95198 Kelch-like protein 2
           (Actin-binding protein Mayven) {Homo sapiens}; contains
           Pfam profiles PF01344: Kelch motif, PF00646: F-box
           domain
          Length = 398

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 142 GKIRDEKTQNWNAKRQN-REGLLGLSLISYNRFF 44
           G++ D +T  W       REG  G S++ Y+R F
Sbjct: 273 GQVYDPRTDQWETMSMGLREGWTGTSVVIYDRLF 306


>At1g76110.1 68414.m08838 high mobility group (HMG1/2) family
           protein / ARID/BRIGHT DNA-binding domain-containing
           protein low similarity to high mobility group protein
           [Plasmodium falciparum] GI:790198; contains Pfam
           profiles PF00505: HMG (high mobility group) box,
           PF01388: ARID/BRIGHT DNA binding domain
          Length = 338

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 172 PNFPQKERKKYTFFILSKYC 231
           PN+P+  R  Y FF   K+C
Sbjct: 252 PNYPKPNRSGYNFFFAEKHC 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,410,299
Number of Sequences: 28952
Number of extensions: 344762
Number of successful extensions: 778
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)