Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120080.Seq
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    29   0.49 
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    28   1.1  
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.5  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   3.5  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   4.6  
SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    26   4.6  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    25   8.0  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 248 RQLVKQGDPLYLQPHTVLITKEGVIQLIMKSKLPYAV 358
           R L++  + +Y      L+ K+GV+ L+ K KLP++V
Sbjct: 525 RDLLRINNEIYEVQTRDLLVKDGVVHLVDKVKLPFSV 561


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 345 SLLFIISWITPSLVMSTVCGCRYSGSPCLTSCLE 244
           +LLF       S   STVCGC  +   C  +CLE
Sbjct: 215 NLLFSCCCARVSWAWSTVCGCYKNTYTCSQTCLE 248


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 520 IIFSWPRPDFR*QTPTFYLTLQSHHNLCPS*RPARTCPCT 401
           ++F WP  D   +  TF  TL    N CP   P +   C+
Sbjct: 161 VLFVWPDNDEFTREGTFETTLAKLKNRCPETTPLKLTDCS 200


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -3

Query: 355 SVRELALHN*LDNTLLGDEHCVRLQVQWVTLLDQLSGAGVYGIDPDS---LYVVLYFLST 185
           SV  L  H  LD T      C  L + W+     LSG   Y I+ +    L   LYFLS+
Sbjct: 277 SVYRLLRHLFLDATAFSC--CQMLNLPWILSKSLLSGTDAYQIEREQAFRLIRTLYFLSS 334


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +3

Query: 66  EDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYT 239
           E +FTL+ ++E G  + +    DIA +L++++ +Q         Y+  Y+  G+ P++
Sbjct: 386 ETSFTLQALVESGLYEKEAFKPDIAKALEFLDRQQIRTQYEGSGYR--YNSLGAWPFS 441


>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 221 GVYTIYPGSRQLVKQGDPLYLQPHTV 298
           G  TIY GSR L K  D +   P T+
Sbjct: 54  GTKTIYKGSRILPKDSDKVLWYPQTI 79


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 651 WLSRLAQCPPCGWPAAPFRGAPRL 580
           W+SR   CP CG    P  G  +L
Sbjct: 175 WISRYRFCPGCGKRNIPTMGGTKL 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,352
Number of Sequences: 5004
Number of extensions: 58965
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)