Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120080.Seq
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425... 30 2.1
03_06_0574 + 34825075-34825362,34825635-34825683,34825847-348260... 29 3.6
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148... 29 4.8
12_01_0429 - 3390096-3390209,3390305-3390547 28 6.3
07_01_0968 - 8111340-8112067,8112496-8112566,8112663-8112837,811... 28 6.3
05_03_0649 - 16566815-16567392,16567491-16567623,16568000-165687... 28 6.3
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679... 28 6.3
02_04_0310 - 21932418-21932531,21932627-21932869 28 6.3
01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398 28 6.3
>04_01_0316 +
4251465-4251590,4251664-4251719,4252973-4253087,
4253174-4253417,4254189-4254325,4255006-4255065,
4255336-4255460,4256021-4256048,4256267-4256336,
4256513-4256565,4256966-4257025,4257498-4257544,
4257617-4257741,4258572-4258686,4258778-4258826,
4260415-4260471,4261126-4261209,4261363-4261442,
4262005-4262094,4262252-4262375
Length = 614
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 39 VKIGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASS 146
V+ G FK ED + L++ N++ +FVA ++ +S
Sbjct: 332 VRCGNFKISEDYQAVNVTLKKDNMRTEFVAAEVDNS 367
>03_06_0574 +
34825075-34825362,34825635-34825683,34825847-34826021,
34826118-34826188,34826764-34827491
Length = 436
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 298 HCVRLQVQWVTLLDQLSGAGVYGIDPDS 215
+C ++ VQ VT+L L+ GIDPDS
Sbjct: 169 YCSQVLVQHVTILAPLNSPNTDGIDPDS 196
>02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857,
35714942-35715135,35715237-35716786,35716946-35717049,
35717258-35717399,35717692-35717910
Length = 1535
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 159 NCKQAVIVNVDKKYKTTY-SESGSIPYTP 242
N +QA I+ D KY ++ ++ GS+PY P
Sbjct: 1270 NSEQAAIITEDVKYTESFLNKPGSLPYAP 1298
>12_01_0429 - 3390096-3390209,3390305-3390547
Length = 118
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 581 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTATFV 682
+ GA R G AAGQ H G +S T PT T +
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVTVI 71
>07_01_0968 -
8111340-8112067,8112496-8112566,8112663-8112837,
8112991-8113054,8113351-8113671,8114413-8114438,
8114495-8114573
Length = 487
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 298 HCVRLQVQWVTLLDQLSGAGVYGIDPDS 215
+C ++ VQ +T+L +S GIDPDS
Sbjct: 220 YCSQVLVQHLTILAPISSPNTDGIDPDS 247
>05_03_0649 -
16566815-16567392,16567491-16567623,16568000-16568765,
16569242-16569260,16569320-16569367,16569401-16569506
Length = 549
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 602 GAAGQPHGGHCARRDSQT*QSPTATFVGRVCVR 700
G +G GGH ARRD Q Q + + +CVR
Sbjct: 22 GISGGGGGGHGARRDDQLVQECSGFCLADLCVR 54
>03_02_0249 -
6792210-6792215,6794332-6794607,6794692-6795180,
6795832-6795900,6797316-6797403,6798193-6798224,
6799277-6799308,6799412-6799646
Length = 408
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 581 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTATFV 682
+ GA R G AAGQ H G +S T PT T +
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVTVI 71
>02_04_0310 - 21932418-21932531,21932627-21932869
Length = 118
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 581 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTATFV 682
+ GA R G AAGQ H G +S T PT T +
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVTVI 71
>01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398
Length = 240
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 581 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTATFV 682
+ GA R G AAGQ H G +S T PT T +
Sbjct: 36 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVTVI 71
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 581 KRGAPRNG--AAGQPHGGHCARRDSQT*QSPTATFV 682
+ GA R G AAGQ H G +S T PT T +
Sbjct: 188 REGARRRGRQAAGQRHSGRQGSNESTTQSQPTVTVI 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,321,963
Number of Sequences: 37544
Number of extensions: 448561
Number of successful extensions: 1214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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