Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120080.Seq
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.69 
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8)                  29   4.9  
SB_18409| Best HMM Match : DM (HMM E-Value=5.9)                        29   4.9  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = -1

Query: 309 LVMSTVCGCRYSGSPCLTSCLEPGYMV*TPTRCTSFC------IFCQH*LSQLVYNLHIL 148
           +VM TVC CRY  S C+ S       V   T C S C      + C    S+ V+++ + 
Sbjct: 246 VVMCTVCACRYVHSVCV-SLRSQCVRVIMYTVCVSLCAQCMRVVMCTVCASRYVHSVCVS 304

Query: 147 NCWRCL 130
            C +C+
Sbjct: 305 LCTQCM 310



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 309 LVMSTVCGCRYSGSPCLTSCLE 244
           +VM TVC CRY  S C++ C +
Sbjct: 312 VVMCTVCACRYIHSVCVSLCAQ 333



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 309 LVMSTVCGCRYSGSPCLTSCLE 244
           +VM TVC CR   S C++ C +
Sbjct: 395 VVMCTVCACRLGHSVCVSLCAQ 416


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +3

Query: 45  IGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKT 206
           I +F+FG        ++   + ++KF AK+IA + K++   QAV ++  K Y T
Sbjct: 116 IPDFRFGCSDLYFVCLMTPKSTEIKFDAKEIADA-KWMETSQAVYLDKGKYYYT 168


>SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 277 QWVTLLDQLSGAGVYGIDPDSLYVVLYFLSTLTITACLQFT 155
           ++ TLLD  S      I  D  Y++LY L  +TIT   +F+
Sbjct: 501 RYCTLLDSKSSKESLNISLDRQYIILYTLYKITITTENEFS 541


>SB_55713| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8)
          Length = 129

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 309 LVMSTVCGCRYSGSPCLTSCLE 244
           +VM  VC CRY  S CL  C +
Sbjct: 65  VVMCAVCACRYVRSVCLLLCAQ 86


>SB_18409| Best HMM Match : DM (HMM E-Value=5.9)
          Length = 190

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 309 LVMSTVCGCRYSGSPCLTSCLE-PGYMV*TPTRC 211
           +VM TV GCRY+ S  ++ C +  G ++ T  RC
Sbjct: 118 VVMRTVRGCRYAHSAWMSLCAQCVGVVIRTVRRC 151


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +3

Query: 57   KFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSE 218
            K GED F +  +L++G   V  V  D+ +S     CK+ ++      Y+  Y E
Sbjct: 2045 KIGEDAFQVFSILQKGKGVVVDVPGDVFNSFVESGCKREILERCFDMYR-AYKE 2097


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = +2

Query: 233 IYPGSRQLVKQGDPLYLQPHTVLITKEGVIQLIM 334
           +  G+ + +++ +PL +  HT +  K+G  ++IM
Sbjct: 334 VLEGNEEQIREENPLLMNKHTAIARKQGFPEVIM 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,852,413
Number of Sequences: 59808
Number of extensions: 502087
Number of successful extensions: 1178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)