Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120080.Seq
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   6.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   6.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   8.7  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 189 DKKYKTTYSESGSIPYTPAPDNWSSKVTHCTCSR 290
           D+K  T Y+    I  TP   +W S   H + ++
Sbjct: 134 DEKISTLYALGAKIIRTPTEASWHSPEAHISVAQ 167


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 274 WVTLLDQLSGAGVYGI 227
           W+T+L  +SGA  Y +
Sbjct: 354 WLTMLSMISGATCYAL 369


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 274 WVTLLDQLSGAGVYGI 227
           W+T+L  +SGA  Y +
Sbjct: 322 WLTMLSMISGATCYAL 337


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -3

Query: 484 QTPTFYLTLQSHHNLCPS*RPARTCPCTALRNHLLQQPRLQFHSVRELALHN*LDNTLLG 305
           QT   Y   Q+H  LCP+  P  T        HL      +  S R  +  N  ++ ++G
Sbjct: 367 QTSVHYSNGQTHSQLCPT--PRST--------HLKVSGINRVGSTRRPSRRNSCESQMMG 416

Query: 304 DEHCVR 287
           DE  +R
Sbjct: 417 DEMSLR 422


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 636 AQCPPCGWPAAPFRG 592
           A   PC W A P++G
Sbjct: 296 ANTKPCTWAARPWQG 310


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 636 AQCPPCGWPAAPFRG 592
           A   PC W A P++G
Sbjct: 296 ANTKPCTWAARPWQG 310


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 636 AQCPPCGWPAAPFRG 592
           A   PC W A P++G
Sbjct: 296 ANTKPCTWAARPWQG 310


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 581 KRGAPRNGAAGQPHGG 628
           +RG+P N + G P GG
Sbjct: 35  QRGSPPNPSQGPPPGG 50


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +2

Query: 284 QPHTVLITKEGVIQL 328
           +PHT L+T++ +++L
Sbjct: 127 RPHTYLVTRQKLLEL 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,790
Number of Sequences: 438
Number of extensions: 4209
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)