Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120080.Seq
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ...    29   3.0  
At2g45270.1 68415.m05635 glycoprotease M22 family protein simila...    29   3.0  
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ...    29   3.0  
At5g18260.1 68418.m02146 expressed protein                             29   4.0  
At5g19720.1 68418.m02345 tRNA synthetase class I (E and Q) famil...    27   9.2  

>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
           (gb|AAC32062.1)
          Length = 278

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 679 ECSSWGLLG-LAITSCAMSAMRLASCAVSRRASFNIVLACTNPA 551
           + ++W   G L     AM A++  S A+  R+  ++VLAC N A
Sbjct: 9   DVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKA 52


>At2g45270.1 68415.m05635 glycoprotease M22 family protein similar
           to SP|P36175 O-sialoglycoprotein endopeptidase (EC
           3.4.24.57) (Glycoprotease) {Pasteurella haemolytica};
           contains Pfam profile PF00814: Glycoprotease family
          Length = 480

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 227 YTIYPGSRQLVKQGDPLYLQPHTVLITKEGVIQLIMKSKLP 349
           + +YPG   L +  + L LQ H  L TK     LI  S  P
Sbjct: 15  FNLYPGISILARNNNSLRLQKHHKLKTKTPTFSLISPSSSP 55


>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
           (PRC2B) (PRS1) identical to GB:AAC32063 from
           [Arabidopsis thaliana] (Genetics 149 (2), 677-692
           (1998)); identical to cDNA proteasome subunit prc2b
           GI:2511585
          Length = 277

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 679 ECSSWGLLG-LAITSCAMSAMRLASCAVSRRASFNIVLACTNPA 551
           + ++W   G L     AM A++  S A+  R+  ++VLAC N A
Sbjct: 9   DVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKA 52


>At5g18260.1 68418.m02146 expressed protein
          Length = 320

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 213 SESGSIPYTPAPDNWSSKVTHCTCSRTQCSSPRRVLSN 326
           SES S+P+    +N SS +THC+  R  C +P  V  N
Sbjct: 87  SES-SVPWETPTNNQSSSLTHCSYPRVFC-NPVSVCEN 122


>At5g19720.1 68418.m02345 tRNA synthetase class I (E and Q) family
           protein similar to tRNA-glutamine synthetase [Lupinus
           luteus] GI:2995455; contains Pfam profile PF03950: tRNA
           synthetases class I (E and Q), anti-codon binding domain
          Length = 170

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 313 LLGDEHCVRLQVQWVTLLDQLSGAGVYGIDPDSLYVVLYFLSTLTI 176
           L   E+   L   W+T ++    +G Y +D DS+   L F  T+T+
Sbjct: 116 LFNSENPAELNDDWLTDINPQLQSGYYTVDKDSIPGKLVFNRTVTL 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,538,205
Number of Sequences: 28952
Number of extensions: 324766
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)