Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120079.Seq
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_14437| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)                   28   9.1  

>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2672

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 543  NQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLA--EQLLEAINTMQQTQR 716
            N   +LL       DV  TRL  +LSE +DS   +  + + ++  EQ L   NT  Q   
Sbjct: 955  NLTEKLLKETTEKLDVAETRLEKVLSENSDSQSKIQRLQETVSHVEQRLTDSNTSDQNLI 1014

Query: 717  NELNN 731
            +ELN+
Sbjct: 1015 SELNS 1019


>SB_14437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 127 DGEQKLLKRLQRHF*ILINVIRVDPKNRRVVEHNVIRRLHI 5
           D E+K L  L  H    +  ++ DP+NR+    N+ ++LH+
Sbjct: 181 DSEEKHLDELIEHAREELTSVKTDPENRKYPFVNLHKKLHL 221


>SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)
          Length = 628

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +3

Query: 546 QNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAINT 698
           Q+  ++AA+E   D +LT+L   L+  T S   + L  D+L    LEA+ T
Sbjct: 291 QHQDVVAAVEAYLDPVLTKLQPALNPETISDAVVLLADDQLLRLPLEALTT 341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,027,842
Number of Sequences: 59808
Number of extensions: 406705
Number of successful extensions: 1164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)