Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120079.Seq
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   4.0  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        23   4.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +3

Query: 453 KRHVDEQRQPNKSQPN*SILELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITD 632
           + +VD +R+PN       +L +   +  + NQN ++  +L+        +L   L+EI D
Sbjct: 509 RAYVDNRRRPNPGTVFARLLSVLTELRTLGNQNSEMCFSLKFKN----KKLPVFLAEIWD 564

Query: 633 SLP 641
             P
Sbjct: 565 VTP 567


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 427 RIFVAVLAWETMNVTAI*TGTEIANEVCREENVISSVIVIGDDG 296
           ++FVA    ET   T+    T     +   +N++ S+  + DDG
Sbjct: 151 KMFVARHLAETPKNTSAVRYTHYIGTLATNDNILESISYVKDDG 194


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 628 VISESNVFNLVKITSL 581
           VI+ S +FNLVKI+ L
Sbjct: 296 VINFSGIFNLVKISPL 311


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 628 VISESNVFNLVKITSL 581
           VI+ S +FNLVKI+ L
Sbjct: 46  VINFSGIFNLVKISPL 61


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 500 VWLRFIW 480
           VWLRFIW
Sbjct: 77  VWLRFIW 83


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,429
Number of Sequences: 438
Number of extensions: 3471
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)