Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120079.Seq
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    32   0.46 
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi...    29   3.2  
At4g18240.1 68417.m02709 starch synthase-related protein contain...    29   3.2  
At3g03360.1 68416.m00334 F-box family protein low similarity to ...    29   3.2  
At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containi...    28   7.4  
At1g64430.1 68414.m07302 expressed protein                             27   9.8  
At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family pr...    27   9.8  

>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 19/65 (29%), Positives = 36/65 (55%)
 Frame = +3

Query: 513  ELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITDSLPDLTLMLDKLAEQLLEAI 692
            E +N++T   +   Q ++ L+  +D++L R N++ S++   L ++ L    LAE LLE  
Sbjct: 1713 EATNLLTTKLSSFDQKISGLQYQEDLMLQRSNSMGSQLDILLKEIDLSNGDLAETLLEQE 1772

Query: 693  NTMQQ 707
              + Q
Sbjct: 1773 RHLNQ 1777


>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 990

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 113  LLFTIPSKHRKMINDAG--GSCHNTVKYMVDIYGASVLI 223
            LL T PS   ++I +    G CHN +KY+  +Y   +++
Sbjct: 932  LLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVL 970


>At4g18240.1 68417.m02709 starch synthase-related protein contains
           similarity to starch synthase GI:4582783 from [Vigna
           unguiculata]
          Length = 1040

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
 Frame = +3

Query: 507 ILELSNVMTGVRNQNVQLLAALETAKDVILTRLNTLLSEITD---SLPDLTLMLDKLAEQ 677
           ++ L    +G+ +    L + L  +++ + ++L+TL  E TD    +  L L+LD+  +Q
Sbjct: 313 VVVLEKECSGLESSVKDLESKLSVSQEDV-SQLSTLKIECTDLWAKVETLQLLLDRATKQ 371

Query: 678 LLEAINTMQQTQ--RNELN 728
             +A+  +QQ Q  RN+++
Sbjct: 372 AEQAVIVLQQNQDLRNKVD 390


>At3g03360.1 68416.m00334 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 481

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +3

Query: 267 YCKQLFVLLLPSSPITITLEITFSSRQTSFAISVP 371
           +CK+L VL L  SP  ITLEIT   R     +  P
Sbjct: 221 FCKKLKVLDLSKSPRLITLEITRRCRMEPTQLVAP 255


>At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containing
           protein nearly identical over 405 amino acids to DYW7
           protein of unknown function GB:CAA06829 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 42 (4), 603-613
           (2000)); contains Pfam profile PF01535: PPR repeat
          Length = 894

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 170 CHNTVKYMVDIYGASVLILRTPC 238
           CH+T KY+   YG  +L+  T C
Sbjct: 857 CHDTAKYVSKRYGCDILLEDTRC 879


>At1g64430.1 68414.m07302 expressed protein
          Length = 559

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +3

Query: 465 DEQRQPNKSQPN*SILELSNVMTGVRNQNV-QLLAALETAKDVILTRLNTLLSEITDSLP 641
           D+  QP+   P  +IL   +  +GV + ++ QLL+        I   +N+ +    + LP
Sbjct: 352 DKILQPSFLIPLLAILATGDAASGVIDPSLPQLLSVATVTSLAIGATVNSFVLPKLNQLP 411

Query: 642 DLTLMLDKLAEQLLEAINTMQQTQRN 719
           + T+ +  + +QLL   + +Q+  R+
Sbjct: 412 ERTVDVVGIKQQLLSQYDVLQRRIRD 437


>At1g62975.1 68414.m07111 basic helix-loop-helix (bHLH) family
           protein (bHLH125) contains Pfam profile: PF00010
           helix-loop-helix DNA-binding domain;  supporting cDNA
           gi|20805889|gb|AF506369.1|
          Length = 259

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
 Frame = -1

Query: 397 TMNVTAI*TGTEIANEVC--REENVISSVI-VIGDDGKSSTNNCLQ*MCSALVGKRARR- 230
           T+ VT    G EI    C  R ++ +SSV+ ++  + + S  +CL    SA   +R    
Sbjct: 181 TVVVTPCLVGVEIIISCCLGRNKSCLSSVLQMLAQEQRFSVVSCL----SARRQQRFMHT 236

Query: 229 --SQNQNGRSVNVHHVFDRVMT 170
             SQ ++G+ +N+  + D++MT
Sbjct: 237 IVSQVEDGKQINILELKDKIMT 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,408,585
Number of Sequences: 28952
Number of extensions: 274795
Number of successful extensions: 794
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)