Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120078.Seq
(485 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204; Euka... 115 7e-25
UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56; Euk... 108 6e-23
UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4; Bilateria|... 103 3e-21
UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3; Eukary... 102 4e-21
UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2; Ost... 102 5e-21
UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3; Eukary... 72 6e-12
UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1; Enceph... 58 8e-08
UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole ge... 58 1e-07
UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1; ... 56 3e-07
UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiel... 51 2e-05
UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1; ... 46 3e-04
UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102... 42 0.007
UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S riboso... 39 0.069
UniRef50_A4ANL3 Cluster: Putative lipoprotein; n=1; Flavobacteri... 34 2.0
UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse t... 33 3.4
UniRef50_A0RUE5 Cluster: Ribosomal protein L15; n=1; Cenarchaeum... 33 3.4
UniRef50_Q232P0 Cluster: MHCK/EF2 kinase domain family protein; ... 33 4.5
UniRef50_UPI0001561318 Cluster: PREDICTED: hypothetical protein;... 32 6.0
UniRef50_Q60KI9 Cluster: Putative uncharacterized protein CBG240... 32 7.9
UniRef50_A7RPS0 Cluster: Predicted protein; n=1; Nematostella ve... 32 7.9
>UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204;
Eukaryota|Rep: 60S ribosomal protein L27a - Homo sapiens
(Human)
Length = 148
Score = 115 bits (276), Expect = 7e-25
Identities = 48/85 (56%), Positives = 61/85 (71%)
Frame = +1
Query: 4 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 183
M + +KTRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKH 60
Query: 184 FHFRKNKNFCPVLNLDKLWTLVSDR 258
+H ++N++FCP +NLDKLWTLVS++
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQ 85
Score = 41.9 bits (94), Expect = 0.007
Identities = 23/64 (35%), Positives = 29/64 (45%)
Frame = +3
Query: 255 QTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGAC 434
QTR+ A G P+I++V++ PKQPVIV VGGAC
Sbjct: 85 QTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGAC 144
Query: 435 VLSA 446
VL A
Sbjct: 145 VLVA 148
>UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56;
Eukaryota|Rep: 60S ribosomal protein L27a-2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 146
Score = 108 bits (260), Expect = 6e-23
Identities = 49/84 (58%), Positives = 56/84 (66%)
Frame = +1
Query: 4 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 183
MAT+ KK RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 184 FHFRKNKNFCPVLNLDKLWTLVSD 255
FH +NK FCP++NLDKLW+LV +
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPE 84
>UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4;
Bilateria|Rep: Ribosomal protein L27a - Ascaris suum
(Pig roundworm) (Ascaris lumbricoides)
Length = 133
Score = 103 bits (246), Expect = 3e-21
Identities = 40/52 (76%), Positives = 47/52 (90%)
Frame = +1
Query: 103 NAGGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSDR 258
NAGG+HHHRIN DKYHPGYFGK+GMRNFH RKN +CP +NLDKLW+LVS++
Sbjct: 20 NAGGQHHHRINFDKYHPGYFGKVGMRNFHVRKNGLYCPTVNLDKLWSLVSEK 71
Score = 43.6 bits (98), Expect = 0.002
Identities = 26/64 (40%), Positives = 30/64 (46%)
Frame = +3
Query: 255 QTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGAC 434
+TR YA D K PVI++VKA PKQPVIV VGGAC
Sbjct: 71 KTRTTYAEKKD-KAPVIDVVKAGYFKVLGKGLLPKQPVIVKAKFFSRTAEQKIKGVGGAC 129
Query: 435 VLSA 446
+L A
Sbjct: 130 ILVA 133
>UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3;
Eukaryota|Rep: 60S ribosomal protein L27a - Tetrahymena
thermophila
Length = 149
Score = 102 bits (245), Expect = 4e-21
Identities = 48/86 (55%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Frame = +1
Query: 4 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXN--AGGEHHHRINMDKYHPGYFGKLGM 177
M + KKTRKLRGHVS AGG HHHRI M+K+HPGY+GKLGM
Sbjct: 1 MVSHLKKTRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGM 60
Query: 178 RNFHFRKNKNFCPVLNLDKLWTLVSD 255
R FH +KN CPV+N+DKLW+LVSD
Sbjct: 61 RTFHLKKNPLHCPVVNIDKLWSLVSD 86
Score = 40.7 bits (91), Expect = 0.017
Identities = 25/63 (39%), Positives = 29/63 (46%)
Frame = +3
Query: 258 TRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACV 437
TR KYA KVPVI++ KA P QPV+V VGGACV
Sbjct: 88 TRQKYAEDKK-KVPVIDVTKAGFFKVLGKGRLPNQPVVVKAKYFSKTAERRIVAVGGACV 146
Query: 438 LSA 446
L+A
Sbjct: 147 LTA 149
>UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2;
Ostreococcus|Rep: 60s ribosomal protein L15/L27 -
Ostreococcus tauri
Length = 198
Score = 102 bits (244), Expect = 5e-21
Identities = 45/84 (53%), Positives = 52/84 (61%)
Frame = +1
Query: 10 TSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFH 189
T K RK RGHVS AGG+HHHRI MDKYHPGYFGK+GMR+FH
Sbjct: 54 TQLHKNRKKRGHVSAGHGRIGKHRKHPAGRGMAGGQHHHRIMMDKYHPGYFGKVGMRHFH 113
Query: 190 FRKNKNFCPVLNLDKLWTLVSDRR 261
KN+ CP +N+DKLWTLV +
Sbjct: 114 KLKNQTVCPTINIDKLWTLVGTEK 137
>UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3;
Eukaryota|Rep: 60S ribosomal protein L27A - Guillardia
theta (Cryptomonas phi)
Length = 144
Score = 72.1 bits (169), Expect = 6e-12
Identities = 41/104 (39%), Positives = 54/104 (51%)
Frame = +1
Query: 4 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 183
M T +++RK RGHVS N+GG+HHH+I +KYH +FGK GMR
Sbjct: 1 MPTDIRRSRKKRGHVSSGHGRVGKHRKHPGGRGNSGGQHHHKIFFEKYHKKHFGKTGMRY 60
Query: 184 FHFRKNKNFCPVLNLDKLWTLVSDRRG*SMHLLQMARSPSSILS 315
+ K NF +NLDK +SD+ +MHL S S LS
Sbjct: 61 YRKLKQNNFNKSINLDK----ISDKLVKNMHLHTKNSSDSFDLS 100
>UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L27a
- Encephalitozoon cuniculi
Length = 147
Score = 58.4 bits (135), Expect = 8e-08
Identities = 28/82 (34%), Positives = 41/82 (50%)
Frame = +1
Query: 4 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 183
M KKTRKLRGHVS AGG H + ++HP Y GK GMR
Sbjct: 1 MTDRVKKTRKLRGHVSHGYGRVGKHRKHSGGRGLAGGFSHMKTFFTRFHPDYHGKRGMRV 60
Query: 184 FHFRKNKNFCPVLNLDKLWTLV 249
+H ++N ++ ++ +LW ++
Sbjct: 61 YHRKENSDYARPISSARLWGMI 82
>UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole
genome shotgun sequence; n=3; Vitis vinifera|Rep:
Chromosome chr12 scaffold_159, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 151
Score = 58.0 bits (134), Expect = 1e-07
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +1
Query: 139 DKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLVSDRRG 264
DK+HPG FGK+GMR+FH + K CP++++DKLW++V G
Sbjct: 28 DKHHPGNFGKVGMRHFHKLRIKLHCPIVHIDKLWSMVPPAAG 69
>UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 187
Score = 56.4 bits (130), Expect = 3e-07
Identities = 23/46 (50%), Positives = 31/46 (67%)
Frame = +1
Query: 112 GEHHHRINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLDKLWTLV 249
G ++ + YFGK+GMR+FH +N +F PV+NLDKLWTLV
Sbjct: 77 GSQEMEVDREIGRDSYFGKVGMRHFHLTRNSSFRPVVNLDKLWTLV 122
Score = 52.4 bits (120), Expect = 5e-06
Identities = 25/50 (50%), Positives = 26/50 (52%)
Frame = +1
Query: 4 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHP 153
M T KTRK RGHVS AGG+HHHR NMDKYHP
Sbjct: 1 MPTHLSKTRKHRGHVSAGNGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHP 50
>UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiella
natans|Rep: Ribosomal protein L27a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 151
Score = 50.8 bits (116), Expect = 2e-05
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +1
Query: 4 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 183
M T KK+RK+RG S +GG+HHH+I ++Y YF K GMR
Sbjct: 1 MVTKLKKSRKMRGKNSSGHGRINKHRKNPGGKGKSGGQHHHKIIFERYRETYFRKTGMRI 60
Query: 184 FHFRKNKN 207
++ K N
Sbjct: 61 YNLEKTLN 68
>UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1;
n=1; Arabidopsis thaliana|Rep: Putative 60S ribosomal
protein L27a-1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 104
Score = 46.4 bits (105), Expect = 3e-04
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +1
Query: 4 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGK--LGM 177
M TS+KKTR LR HVS H R + PG G +GM
Sbjct: 1 MTTSRKKTRNLREHVSVG---------------------HGRFGKHRKLPGSRGNAGVGM 39
Query: 178 RNFHFRKNKNFCPVLNLDKLWTLV 249
R FH +NK +C ++NLDKLW++V
Sbjct: 40 RYFHKLRNKFYCQIVNLDKLWSMV 63
>UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102C;
n=2; Saccharomycetaceae|Rep: Putative uncharacterized
protein YGL102C - Saccharomyces cerevisiae (Baker's
yeast)
Length = 142
Score = 41.9 bits (94), Expect = 0.007
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = -3
Query: 249 D*CPKLI*VQNWTEILVLSKVEISHTKFAKVSRMVLVHVDXXXXXXXXXXXXXXXXXVLS 70
D CP+ + VQ+W + L VE+SHT +++ MV +HV+ VL+
Sbjct: 71 DQCPQFVQVQDWLPEMSLLLVEVSHTNLTEITWMVFIHVNSVVMLTTGHTSTTGVLSVLT 130
Query: 69 DTTMS 55
DTT +
Sbjct: 131 DTTFT 135
>UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S ribosomal
protein L27a; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L27a - Rattus
norvegicus
Length = 86
Score = 38.7 bits (86), Expect = 0.069
Identities = 21/51 (41%), Positives = 24/51 (47%)
Frame = +1
Query: 4 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPG 156
M+ +KTRK +GHVS NAGGEH HRIN PG
Sbjct: 1 MSGRLRKTRKFQGHVSDSHSRISKHHKHRGGQRNAGGEHLHRINCYYKVPG 51
>UniRef50_A4ANL3 Cluster: Putative lipoprotein; n=1;
Flavobacteriales bacterium HTCC2170|Rep: Putative
lipoprotein - Flavobacteriales bacterium HTCC2170
Length = 535
Score = 33.9 bits (74), Expect = 2.0
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -2
Query: 436 TQAPPTSLIFFSADFEKNFAFTMTGCLGSLPL 341
T A SL FFS D + N A T GCLG+ P+
Sbjct: 306 TDAEGNSLYFFSLDTKDNSACTSAGCLGAWPV 337
>UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse
transcriptase; n=1; Arabidopsis thaliana|Rep: Putative
non-LTR retroelement reverse transcriptase - Arabidopsis
thaliana (Mouse-ear cress)
Length = 1044
Score = 33.1 bits (72), Expect = 3.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 138 GQVPSWILWQTWYEKFPL*KEQEFLSSFEL 227
GQ+P WILW W + L EQ+ +SS +L
Sbjct: 842 GQLPIWILWNLWNCRNKLIFEQKHISSMDL 871
>UniRef50_A0RUE5 Cluster: Ribosomal protein L15; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L15 - Cenarchaeum
symbiosum
Length = 138
Score = 33.1 bits (72), Expect = 3.4
Identities = 26/89 (29%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Frame = +1
Query: 4 MATSKKKTRKLRG-HVSXXXXXXXXXXXXXXXXXNAGGE-HHHRINMDKYHPGYFGKLGM 177
MAT +KTRKLRG G+ HH +M K PG+FG
Sbjct: 1 MATRNRKTRKLRGSRTHGWGQVGQHRASGHKGGVGVSGQLKHHFSSMLKEDPGHFGHDST 60
Query: 178 RNFHFRKNKNFCPVLNLDKLWTLVSDRRG 264
H K + V +LD T G
Sbjct: 61 HPPHSNAAKKWASVRDLDDFHTRFGTEEG 89
>UniRef50_Q232P0 Cluster: MHCK/EF2 kinase domain family protein;
n=1; Tetrahymena thermophila SB210|Rep: MHCK/EF2 kinase
domain family protein - Tetrahymena thermophila SB210
Length = 842
Score = 32.7 bits (71), Expect = 4.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 294 PCHLEQMHTSASSVRD*CPKLI*VQNWTEILVLSKVEIS 178
PCH ++ HT+A + CPK + ++ E L +E+S
Sbjct: 184 PCHGKKYHTTADDYPEGCPKGVNIEGLIETLAKRNIELS 222
>UniRef50_UPI0001561318 Cluster: PREDICTED: hypothetical protein;
n=1; Equus caballus|Rep: PREDICTED: hypothetical protein
- Equus caballus
Length = 419
Score = 32.3 bits (70), Expect = 6.0
Identities = 17/24 (70%), Positives = 18/24 (75%)
Frame = +1
Query: 244 LVSDRRG*SMHLLQMARSPSSILS 315
L D RG SM+LL MARSPSSI S
Sbjct: 283 LPEDLRGSSMNLLSMARSPSSISS 306
>UniRef50_Q60KI9 Cluster: Putative uncharacterized protein CBG24039;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG24039 - Caenorhabditis
briggsae
Length = 991
Score = 31.9 bits (69), Expect = 7.9
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 127 RINMDKYHPGYFGKLGMRNFHFRKNKNFCPVLNLD-KLWTLVSDR 258
++ D+Y Y G L + FHF K C + +LD K WT+++D+
Sbjct: 894 KVLADRYKQ-YNGMLKEKKFHFDKLFEICKLTDLDKKQWTILNDQ 937
>UniRef50_A7RPS0 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 306
Score = 31.9 bits (69), Expect = 7.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 211 RNSCSF*SGNFSYQVCQSIQDGTCPC*FCDGAHHQHYHDLLDAYGA 74
R+SC + F +C+S T PC D H +H DL+D GA
Sbjct: 108 RSSCQ--ARCFMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 151
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 429,615,122
Number of Sequences: 1657284
Number of extensions: 7973016
Number of successful extensions: 18839
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 18178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18822
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -