Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120078.Seq
         (485 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.     109   3e-24
U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal prot...   109   3e-24
AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p pro...   109   3e-24
AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA...   109   3e-24
X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal prot...   107   1e-23
D10228-1|BAA01080.1|  761|Drosophila melanogaster Ets domain pro...    29   2.6  
EF058032-1|ABL84967.1|  796|Drosophila melanogaster Nup153 protein.    28   7.8  
EF058031-1|ABL84966.1|  796|Drosophila melanogaster Nup153 protein.    28   7.8  

>U66358-1|AAC47472.1|  149|Drosophila melanogaster RpL27a protein.
          Length = 149

 Score =  109 bits (261), Expect = 3e-24
 Identities = 48/78 (61%), Positives = 53/78 (67%)
 Frame = +1

Query: 16  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 195
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 196 KNKNFCPVLNLDKLWTLV 249
           +   F P +NLDKLW+LV
Sbjct: 66  RQHKFRPEINLDKLWSLV 83



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +3

Query: 291 KVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 446
           K PVI++VK            P +PVIV                GG C+LSA
Sbjct: 98  KAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>U66357-1|AAC47475.1|  149|Drosophila melanogaster ribosomal protein
           RpL27a protein.
          Length = 149

 Score =  109 bits (261), Expect = 3e-24
 Identities = 48/78 (61%), Positives = 53/78 (67%)
 Frame = +1

Query: 16  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 195
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 196 KNKNFCPVLNLDKLWTLV 249
           +   F P +NLDKLW+LV
Sbjct: 66  RQHKFRPEINLDKLWSLV 83



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +3

Query: 291 KVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 446
           K PVI++VK            P +PVIV                GG C+LSA
Sbjct: 98  KAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>AY071144-1|AAL48766.1|  149|Drosophila melanogaster RE17991p
           protein.
          Length = 149

 Score =  109 bits (261), Expect = 3e-24
 Identities = 48/78 (61%), Positives = 53/78 (67%)
 Frame = +1

Query: 16  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 195
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 196 KNKNFCPVLNLDKLWTLV 249
           +   F P +NLDKLW+LV
Sbjct: 66  RQHKFRPEINLDKLWSLV 83



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +3

Query: 291 KVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 446
           K PVI++VK            P +PVIV                GG C+LSA
Sbjct: 98  KAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>AE014134-746|AAF51006.3|  149|Drosophila melanogaster CG15442-PA
           protein.
          Length = 149

 Score =  109 bits (261), Expect = 3e-24
 Identities = 48/78 (61%), Positives = 53/78 (67%)
 Frame = +1

Query: 16  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 195
           +KKTRKLRGHVS                 NAGG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 196 KNKNFCPVLNLDKLWTLV 249
           +   F P +NLDKLW+LV
Sbjct: 66  RQHKFRPEINLDKLWSLV 83



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +3

Query: 291 KVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 446
           K PVI++VK            P +PVIV                GG C+LSA
Sbjct: 98  KAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKKAGGVCLLSA 149


>X74484-1|CAA52601.1|  149|Drosophila melanogaster ribosomal protein
           L27a protein.
          Length = 149

 Score =  107 bits (256), Expect = 1e-23
 Identities = 47/78 (60%), Positives = 52/78 (66%)
 Frame = +1

Query: 16  KKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNFHFR 195
           +KKTRKLRGHVS                 N GG HHHRIN DKYHPGYFGK+GMRNFH R
Sbjct: 6   RKKTRKLRGHVSHGHGRIGKHRKHPGGRGNLGGMHHHRINFDKYHPGYFGKVGMRNFHLR 65

Query: 196 KNKNFCPVLNLDKLWTLV 249
           +   F P +NLDKLW+LV
Sbjct: 66  RQHKFRPEINLDKLWSLV 83



 Score = 31.1 bits (67), Expect = 0.84
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 291 KVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGACVLSA 446
           K PVI++VK            P +PVIV              + GG C+LSA
Sbjct: 98  KAPVIDLVKFGYYKLLGRGHLPARPVIVKAKYFSKKAEDKIKEAGGVCLLSA 149


>D10228-1|BAA01080.1|  761|Drosophila melanogaster Ets domain
           protein protein.
          Length = 761

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 299 RHQYCQSWILQVARQRQTPQTTCHSKSKVLLKIS 400
           RH  C+   + +A  R+TP  TC S+ + +L+ S
Sbjct: 710 RHSQCRWKAIAMAASRRTPSDTCSSRRRSVLRQS 743


>EF058032-1|ABL84967.1|  796|Drosophila melanogaster Nup153 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 109 GGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKN 207
           GG+     +M++YH    G  G+R  H+  N N
Sbjct: 410 GGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSN 442


>EF058031-1|ABL84966.1|  796|Drosophila melanogaster Nup153 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 109 GGEHHHRINMDKYHPGYFGKLGMRNFHFRKNKN 207
           GG+     +M++YH    G  G+R  H+  N N
Sbjct: 410 GGDSQSESDMNEYHDNGEGHDGLRPSHYNSNSN 442


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,799,281
Number of Sequences: 53049
Number of extensions: 402909
Number of successful extensions: 1473
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1705394754
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)