Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120077.Seq
         (775 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    40   0.069
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    36   1.1  
UniRef50_A4A7F0 Cluster: Protein containing EAL/GGDEF/PAS domain...    36   1.5  
UniRef50_UPI00015A42DC Cluster: TMEM16C protein; n=2; Euteleosto...    33   6.0  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 39.9 bits (89), Expect = 0.069
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +1

Query: 613 MGDGNHSPSGGPCARLPTRA 672
           MGDGNHSPSG P A LPTRA
Sbjct: 1   MGDGNHSPSGRPYASLPTRA 20


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 35.9 bits (79), Expect = 1.1
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +3

Query: 570  GRQRLGSPHGIAEVHGRR 623
            GRQRLGS  GIAEVHGRR
Sbjct: 969  GRQRLGSAPGIAEVHGRR 986


>UniRef50_A4A7F0 Cluster: Protein containing EAL/GGDEF/PAS domains;
           n=1; Congregibacter litoralis KT71|Rep: Protein
           containing EAL/GGDEF/PAS domains - Congregibacter
           litoralis KT71
          Length = 810

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 25/72 (34%), Positives = 34/72 (47%)
 Frame = -1

Query: 472 LLGGESEGTMEAAIKRSILQGLLHQNYDLPLIERENQPILFGHITRSNTVILEKQWILEP 293
           +L GE  G    A  R   +GLL     LPLI+REN  I FG    S  V   +QW  + 
Sbjct: 560 MLTGELLGVEALARWRHPHRGLLQPPEFLPLIDRENLQIEFGEWVLSEAVEQIRQWRGQE 619

Query: 292 IKGEVILRLNSI 257
           I  +V + +  +
Sbjct: 620 IATQVSVNIAGV 631


>UniRef50_UPI00015A42DC Cluster: TMEM16C protein; n=2;
           Euteleostomi|Rep: TMEM16C protein - Danio rerio
          Length = 658

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -3

Query: 773 DKCFRKSSNKSLKSRDMNEIR--AFE-IWCSFFLF--LFALVGRRAHGPPEGEWLPSPMD 609
           DKC R   N SL   DM E+R  ++E  +C FF    LF    R    PP   W P P +
Sbjct: 577 DKCLRGYLNNSLSVFDMGELRNGSYENQYCRFFWIQVLFLCRYRDYRAPP---WSPEPYE 633

Query: 608 FS 603
           F+
Sbjct: 634 FT 635


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 732,934,770
Number of Sequences: 1657284
Number of extensions: 14985890
Number of successful extensions: 36228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 35159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36225
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)