Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120077.Seq
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ...    27   3.0  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    27   3.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.9  
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    27   3.9  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   5.2  

>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
           Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 202

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 365 STNSLWTYNAIKHSHIGEAVDFGTDKGGSDSEA 267
           ST  LW   A+   + G+    GT  GG +S A
Sbjct: 96  STGGLWVQGALHGKYFGQFFSTGTLGGGQESTA 128


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -3

Query: 428 EIDSTRALASKLRLASHRARKSTNSLWTYNAIKHSHIGEAVDFGTDKGGSDSEAEFHHML 249
           E + T A+ S   +  H   K    L   NA  +S I E      D GGS S  +F H +
Sbjct: 292 EANPTAAILSACLMLRHLGLKDYADL--INAATYSVIEEGKTLTKDLGGSASTGDFTHAI 349


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -1

Query: 454  EGTMEAAIKRSILQGLLHQNYDLPLIERENQPILFGHITRSNTVILEKQWILEPIKG 284
            EG ++ A   S   GL+ +N DL L+   ++  L  +  R  ++I  +   + PI+G
Sbjct: 919  EGPVKIACFGSYRTGLMTKNSDLDLVIYSSKEALLPYYDRVKSIIKNEFSNVMPIRG 975


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = -1

Query: 535 LRLKDYCLDSNFTRTDGRAKALLGGESEGTMEAAIKRSILQGLLHQ 398
           LR+K   L ++    + + K    GE+E   EAAI RSI+Q +L++
Sbjct: 108 LRIKQLLLWASSKALEEQRKKY--GETEEASEAAIARSIVQEVLNE 151


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 616 PWTSAMPWGEPSRCLPLKTNF*RLTFFLRLKDY 518
           PW S+  WG P + L  KT     +  L+ ++Y
Sbjct: 11  PWASSSNWGSPVKPLNYKTAIGNSSIPLQYRNY 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,533
Number of Sequences: 5004
Number of extensions: 62898
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)