Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120077.Seq
         (775 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016668-5|AAB66093.1|  352|Caenorhabditis elegans Hypothetical ...    29   4.9  
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    29   4.9  

>AF016668-5|AAB66093.1|  352|Caenorhabditis elegans Hypothetical
           protein F36H9.5 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 388 LPLIERENQPILFGHITRSNTVILEKQWILEPIKGEVILRLNSITCFRTAV 236
           +P   RENQ + +GH+   N  I    + L  ++  +I    S+T F  AV
Sbjct: 29  VPRTSRENQQLKYGHVEDDNVDIAYLDFPL--LRASLIFTFISVTAFVAAV 77


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
           protein D1007.15 protein.
          Length = 1184

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 400 QNYDLPLIERENQPILFGHITRSNTVILEKQWILEPIKGEVILRLNS 260
           QN    L E +N P+L G  T SNT  +E+   +    GEV++ + S
Sbjct: 796 QNVRPHLDEVDNVPLLVGLFTDSNTSAVEEMIEIMQENGEVVMVVGS 842


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,745,766
Number of Sequences: 27780
Number of extensions: 353381
Number of successful extensions: 810
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)