Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120077.Seq
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   7.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.3  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        22   7.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.6  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 49  SLLHSKKAKEVFFVVMICFSEFLTFSSPVK 138
           SL +S K +++   +++ FSEF     P K
Sbjct: 511 SLKYSDKERDLSLRMILYFSEFAYLGKPTK 540


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 403 ARALVESISLWQLPWCPQI 459
           A+  + +ISLW + W P +
Sbjct: 277 AKVALMTISLWFMAWTPYL 295


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 650 HGPPEGEWLPSPMDFSNAMG 591
           H P E  WLP  + ++NA G
Sbjct: 96  HVPSEHIWLPDIVLYNNADG 115


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 652 RTAHLKVSGYRRPWTSAMP 596
           R+ HLKVSG  R  ++  P
Sbjct: 386 RSTHLKVSGINRVGSTRRP 404


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 434 HKEIDSTRALASKLRLASHRARKSTNSLWTYNAIKH 327
           HKE    + L S +    H+  ++ NSL  + +I H
Sbjct: 390 HKEQQHFQPLNSAVCALCHKVFRTLNSLNNHKSIYH 425


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 403 ARALVESISLWQLPWCPQI 459
           A+  + +ISLW + W P +
Sbjct: 27  AKVALMTISLWFMAWTPYL 45


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 668 LVGRRAHGPPEGEWLP 621
           L+G R   PP  +W P
Sbjct: 408 LIGSRRTSPPPEDWKP 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,572
Number of Sequences: 438
Number of extensions: 4595
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)