Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120076.Seq
(601 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 85 1e-15
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 44 0.002
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 44 0.003
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 43 0.005
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 40 0.045
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 39 0.10
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 36 0.73
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 36 0.73
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 35 1.7
UniRef50_A0BJI8 Cluster: Chromosome undetermined scaffold_110, w... 34 2.2
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 33 6.8
UniRef50_A6PS51 Cluster: Putative uncharacterized protein precur... 33 6.8
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 85.0 bits (201), Expect = 1e-15
Identities = 39/39 (100%), Positives = 39/39 (100%)
Frame = +1
Query: 391 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQ 507
FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQ
Sbjct: 3 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQ 41
Score = 63.3 bits (147), Expect = 4e-09
Identities = 34/45 (75%), Positives = 35/45 (77%), Gaps = 9/45 (20%)
Frame = +2
Query: 41 FTNLVDTLVNTI---------VETAISNFRHKLQLYPYQVNSKLM 148
FTNLVDTL NTI VETAISNFRHKLQLYPYQVNSKL+
Sbjct: 3 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQVNSKLI 47
Score = 58.0 bits (134), Expect = 2e-07
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +1
Query: 256 APLVETAISNFRHKLQLYPYQVNSKLM 336
APLVETAISNFRHKLQLYPYQVNSKL+
Sbjct: 21 APLVETAISNFRHKLQLYPYQVNSKLI 47
Score = 40.7 bits (91), Expect = 0.026
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = +2
Query: 203 FTNLVDTLANTIHRDAIRLP 262
FTNLVDTLANTIHRDAI P
Sbjct: 3 FTNLVDTLANTIHRDAITAP 22
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 44.4 bits (100), Expect = 0.002
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +1
Query: 400 LVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQEIP 516
LV+ L T+HRD + +PLVE A R LQLYPY +IP
Sbjct: 137 LVEILNPTVHRDTVCSPLVEAAAGPLRDSLQLYPY-DIP 174
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 44.0 bits (99), Expect = 0.003
Identities = 19/42 (45%), Positives = 32/42 (76%)
Frame = +1
Query: 397 NLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQEIPSS 522
++++TL++TIHRD I APL+ET S +R L+ +P+ +P+S
Sbjct: 26 DVIETLSSTIHRDTIAAPLMETLASPYRDSLRDFPW-AVPAS 66
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 43.2 bits (97), Expect = 0.005
Identities = 16/38 (42%), Positives = 29/38 (76%)
Frame = +1
Query: 391 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 504
F +D L++T HRD+I+APL+++++S + L+L+PY
Sbjct: 3 FQLALDALSSTTHRDSISAPLLDSSVSQLQSSLELFPY 40
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 39.9 bits (89), Expect = 0.045
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1
Query: 391 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 504
F + + L++T+HRD + APL+E+ R L+LYP+
Sbjct: 3 FQDAFNNLSSTVHRDTVAAPLLESIAQPLRDSLELYPW 40
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 38.7 bits (86), Expect = 0.10
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 403 VDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 504
V++L T HRD ITAP+VE+ + R L+ YP+
Sbjct: 14 VESLTPTTHRDTITAPIVESLATPLRRSLERYPW 47
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 35.9 bits (79), Expect = 0.73
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +1
Query: 391 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQEIPSSCKILIPYSSQFWV 561
F +D LA T HRD P++E+ + + R +Q YP+ IP K L+P + + +
Sbjct: 3 FQLALDALAPTTHRDPSLHPILESTVDSIRSSIQTYPW-SIP---KELLPLLNSYGI 55
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 35.9 bits (79), Expect = 0.73
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 391 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 504
F + ++ L +T HRDA T P++ + + R L LYP+
Sbjct: 3 FQSALEALNSTTHRDASTNPILNSVVEPLRDSLSLYPW 40
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 34.7 bits (76), Expect = 1.7
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 409 TLANTIHRDAITAPLVETAISNFRHKLQLYPYQEIPSS 522
+LA T HRD I PL+E +R L YP+ IP++
Sbjct: 97 SLAPTTHRDTIATPLMEALAEPYRQSLSTYPW-HIPTN 133
>UniRef50_A0BJI8 Cluster: Chromosome undetermined scaffold_110,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_110,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 781
Score = 34.3 bits (75), Expect = 2.2
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 391 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPYQEIPSSCKILIPYS 546
FTNL T+ N+ ++ + +E +I+ K LY YQ S ++ IPYS
Sbjct: 707 FTNLQSTIENSFNQTQMQVQKIENSINE--QKNSLYSYQLFESKPQVQIPYS 756
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle
virus|Rep: Replicase - Dulcamara mottle virus
Length = 1742
Score = 32.7 bits (71), Expect = 6.8
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +1
Query: 391 FTNLVDTLANTIHRDAITAPLVETAISNFRHKLQLYPY 504
F + ++ L +T HRDA++ P++ + + + L+ YP+
Sbjct: 3 FQSALEALNSTTHRDAVSHPILTSVVRPLQDSLETYPW 40
>UniRef50_A6PS51 Cluster: Putative uncharacterized protein
precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep:
Putative uncharacterized protein precursor - Victivallis
vadensis ATCC BAA-548
Length = 581
Score = 32.7 bits (71), Expect = 6.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 466 WRFPLGEPLWRLGGWC 419
W F LG P+W++ GWC
Sbjct: 30 WLFALGVPVWKMAGWC 45
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,603,416
Number of Sequences: 1657284
Number of extensions: 9622503
Number of successful extensions: 18726
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18719
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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