Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120075.Seq
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)                       29   5.6  
SB_53066| Best HMM Match : RR_TM4-6 (HMM E-Value=0.68)                 29   5.6  
SB_41087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_38804| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_35476| Best HMM Match : zf-C2H2 (HMM E-Value=4.3)                   29   5.6  
SB_25901| Best HMM Match : DUP (HMM E-Value=4.5)                       29   5.6  
SB_3566| Best HMM Match : zf-C2H2 (HMM E-Value=4.3)                    29   5.6  
SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_50196| Best HMM Match : efhand (HMM E-Value=0.0048)                 28   9.9  
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_13258| Best HMM Match : efhand (HMM E-Value=0.0048)                 28   9.9  

>SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1101

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 464 SREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQP 330
           S E + +ALV   +DN N +IAK  G+S+  +T    +Y   K P
Sbjct: 183 SVEREIQALVGKSDDNTNKKIAKMDGSSQIPDTLLPSEYHIVKNP 227


>SB_16709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 783 FRSYETLKLNWRSANTWLCSAP-WK*PS--RCWKYLETKQTLGKL 658
           F S  TLK   +  N W  + P W+  S  +C+K+L+TK+ L  L
Sbjct: 42  FGSNGTLKRRQKKNNDWQITDPRWRTKSANKCYKFLQTKKDLSIL 86


>SB_30920| Best HMM Match : DUP (HMM E-Value=4.6)
          Length = 404

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -2

Query: 407 RIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLISNMPICIII 228
           R A+     KR +   SD Y S    D+D+     S +E EA+  L      N+    I+
Sbjct: 153 RTARLARPCKRPSLVESDQY-STSDEDFDVTKQPVSFSEDEASVALMTTTSVNVSHLTIL 211

Query: 227 FLKIT 213
           FL I+
Sbjct: 212 FLLIS 216


>SB_53066| Best HMM Match : RR_TM4-6 (HMM E-Value=0.68)
          Length = 411

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -2

Query: 407 RIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLISNMPICIII 228
           R A+     KR +   SD Y S    D+D+     S +E EA+  L      N+    I+
Sbjct: 249 RTARLARPCKRPSLVESDQY-STSDEDFDVTKQPVSFSEDEASVALMTTTSVNVSHLTIL 307

Query: 227 FLKIT 213
           FL I+
Sbjct: 308 FLLIS 312


>SB_41087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -2

Query: 407 RIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLISNMPICIII 228
           R A+     KR +   SD Y S    D+D+     S +E EA+  L      N+    I+
Sbjct: 94  RTARLARPCKRPSLVESDQY-STSDEDFDVTKQPVSFSEDEASVALMTTTSVNVSHLTIL 152

Query: 227 FLKIT 213
           FL I+
Sbjct: 153 FLLIS 157


>SB_38804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 201 YCKSLTDHSLFTNKLRSTMSTKTSNLLLS 115
           YCK   D +LF +K+  T  +KTS +L S
Sbjct: 188 YCKVEKDLNLFCSKILPTRDSKTSKILTS 216


>SB_35476| Best HMM Match : zf-C2H2 (HMM E-Value=4.3)
          Length = 243

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -2

Query: 407 RIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLISNMPICIII 228
           R A+     KR +   SD Y S    D+D+     S +E EA+  L      N+    I+
Sbjct: 81  RTARLARPCKRPSLVESDQY-STSDEDFDVTKQPVSFSEDEASVALMTTTSVNVSHLTIL 139

Query: 227 FLKIT 213
           FL I+
Sbjct: 140 FLLIS 144


>SB_25901| Best HMM Match : DUP (HMM E-Value=4.5)
          Length = 186

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -2

Query: 407 RIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLISNMPICIII 228
           R A+     KR +   SD Y S    D+D+     S +E EA+  L      N+    I+
Sbjct: 24  RTARLARPCKRPSLVESDQY-STSDEDFDVTKQPVSFSEDEASVALMTTTSVNVSHLTIL 82

Query: 227 FLKIT 213
           FL I+
Sbjct: 83  FLLIS 87


>SB_3566| Best HMM Match : zf-C2H2 (HMM E-Value=4.3)
          Length = 323

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -2

Query: 407 RIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLISNMPICIII 228
           R A+     KR +   SD Y S    D+D+     S +E EA+  L      N+    I+
Sbjct: 82  RTARLARPCKRPSLVESDQY-STSDEDFDVTKQPVSFSEDEASVALMTTTSVNVSHLTIL 140

Query: 227 FLKIT 213
           FL I+
Sbjct: 141 FLLIS 145


>SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 201 YCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTI 97
           YC+  T H LF+N  R+  +    NL LS  K  I
Sbjct: 430 YCRGNTPHELFSNWKRTLQALHECNLRLSASKTII 464


>SB_50196| Best HMM Match : efhand (HMM E-Value=0.0048)
          Length = 112

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = -2

Query: 452 DTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQY 273
           D E  V   +DN  +   K F         + D  E  K     ++++   + +VEATQ 
Sbjct: 12  DLEDAVKDPSDN-KILTDKDFELYDENGNGKLDHKEMAKYLKDALEIAKRKVKQVEATQD 70

Query: 272 LTLLLISNMPICIIIFL 222
             +  ++++ +CI++ L
Sbjct: 71  KNIPRLNSLHLCIVLIL 87


>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -1

Query: 258 DLEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTKTSN 127
           ++E+ Y  YY  KN    +  K L D++LF+N+ +   S ++ N
Sbjct: 376 EIENLY-QYYKVKNMKSIDRFKQLIDYALFSNQRKILDSPRSRN 418


>SB_13258| Best HMM Match : efhand (HMM E-Value=0.0048)
          Length = 305

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/77 (23%), Positives = 35/77 (45%)
 Frame = -2

Query: 452 DTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQY 273
           D E  V   +DN  +   K F         + D  E  K     ++++   + +VEATQ 
Sbjct: 12  DLEDAVKDPSDN-KILTDKDFELYDENGNGKLDHKEMAKYLKDALEIAKRKVKQVEATQD 70

Query: 272 LTLLLISNMPICIIIFL 222
             +  ++++ +CI++ L
Sbjct: 71  KNIPRLNSLNLCIVLIL 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,078,405
Number of Sequences: 59808
Number of extensions: 422265
Number of successful extensions: 1019
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)