Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120075.Seq
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   4.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   9.8  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +3

Query: 510 PSFSVNKMGSPGMLVSLVSVTTN 578
           P ++V ++  PG+ ++ + +TTN
Sbjct: 420 PQYTVQQLDFPGIEIADIKLTTN 442


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 769 NSEIKLALSKYMAMLSTLEMTQPLLEI 689
           N  ++ +++KY+  L  +E T+P+L I
Sbjct: 97  NLNLRDSVTKYLIHLKEIEDTEPILLI 123


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 543 PENPFCLQKTRGAVVL 496
           PE+  C + T GAVVL
Sbjct: 201 PEDEECTEATAGAVVL 216


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -3

Query: 628 IHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILF 524
           +   +   +  +T K+EFVV +      P  P +F
Sbjct: 387 LETEWSSFINPWTKKLEFVVGQHRILKGPANPDIF 421


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -3

Query: 628 IHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILF 524
           +   +   +  +T K+EFVV +      P  P +F
Sbjct: 93  LETEWSSFINPWTKKLEFVVGQHRILKGPANPDIF 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,824
Number of Sequences: 438
Number of extensions: 3998
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)