Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120073.Seq
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)                 50   2e-06
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)                        33   0.27 
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)                        31   0.81 
SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)              30   1.4  
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)                 29   4.3  
SB_11059| Best HMM Match : KID (HMM E-Value=0.046)                     29   4.3  
SB_10815| Best HMM Match : EGF (HMM E-Value=5.7e-09)                   29   4.3  
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)                    29   4.3  
SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)             29   4.3  
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_51940| Best HMM Match : Glyco_transf_22 (HMM E-Value=1.8)           28   5.7  
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)           28   5.7  
SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_55305| Best HMM Match : Pre-SET (HMM E-Value=4.6)                   28   7.6  

>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
          Length = 304

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 19/44 (43%), Positives = 32/44 (72%)
 Frame = +3

Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
           E+D+ +L +  GP+ +++LAK+K T   KGFA+++F  R DAA+
Sbjct: 194 ESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAAR 237



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 21/36 (58%), Positives = 27/36 (75%)
 Frame = +2

Query: 8   KIVTEYKYDNDNKKVKIVRTYKIEKCVVSKSIAKRK 115
           KIVTEYK D++ K  KI+ TY++E   V+K IAKRK
Sbjct: 88  KIVTEYKRDDEGKLQKIITTYRVETRRVAKEIAKRK 123



 Score = 35.5 bits (78), Expect = 0.038
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 256 LKPPSSNVIFKCRTCQGDHLTLYCPFK 336
           LK  S   I +CR C+GDH T  CP+K
Sbjct: 133 LKKLSGQKIVQCRICKGDHWTTKCPYK 159


>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 1026

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 519 EADIDDLVKGFGPVHKLYLAKEKST-GHCKGFAYVHFKFRADAAK 650
           +A+     +  GP+ + ++ K+K     C+GF YV F    DA K
Sbjct: 33  DAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALK 77


>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 593

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 516 VEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 644
           +E DI  + + FG V    L+KE  TG  KG+ ++ ++ +  A
Sbjct: 211 LEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSA 253


>SB_37954| Best HMM Match : Taeniidae_ag (HMM E-Value=1.5)
          Length = 297

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +2

Query: 77  EKCVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGE 247
           E+ + +KS  + K+ S  GDS S  P P+ +   + ++V  Q ++  ++     D E
Sbjct: 74  EEAIGAKSENEEKSESSSGDSESPPPKPHVSAKELIDEVVKQEMSKHKKKNNDGDSE 130


>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1291

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 626
           E  + +L+  FG +    L K+ +TG  KG+A+  +
Sbjct: 686 EDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEY 721


>SB_47007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1174

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
 Frame = +2

Query: 26  KYDNDNKKVKIVRTYKIEKCVV-------SKSIAKRKTWSKFGDSASDK 151
           K    + +V+I R Y+IEKC +          IAK KT  K  DSA+ K
Sbjct: 754 KVTTTSSQVEISRDYEIEKCEILVKLEKKEGVIAKMKTQQKSSDSAAAK 802


>SB_12829| Best HMM Match : zf-CCHC (HMM E-Value=6e-06)
          Length = 159

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 259 KPPSSNVIFKCRTCQGDHLTLYCPFKHTQ 345
           KPP S  + KC  C G H    C F  ++
Sbjct: 109 KPPQSATVSKCYRCDGKHDPRSCVFSQSK 137


>SB_11059| Best HMM Match : KID (HMM E-Value=0.046)
          Length = 296

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
 Frame = +2

Query: 26  KYDNDNKKVKIVRTYKIEKCVV-------SKSIAKRKTWSKFGDSASDK 151
           K    + +V+I R Y+IEKC +          IAK KT  K  DSA+ K
Sbjct: 223 KLTTTSSQVEISRDYEIEKCEILVKLEQKEGVIAKMKTQQKSSDSAAAK 271


>SB_10815| Best HMM Match : EGF (HMM E-Value=5.7e-09)
          Length = 415

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 47  KVKIVRTYKIEKCVVSKSIAKRKTWSKFGDSASDKPGPNPATTNV 181
           K  I+R Y+    ++  +  KR  W +FG +   K GP    +N+
Sbjct: 179 KGPIIRQYRSSLALIGYAGRKRPHWMRFGQNPPSK-GPTTVNSNI 222


>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
          Length = 703

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 418 PPSSAGRIPGRDQPPVRRED 477
           P     RIPG DQP V RED
Sbjct: 630 PVKRVSRIPGNDQPRVSRED 649


>SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)
          Length = 773

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +2

Query: 17  TEYKYDNDNKKVKIVRTYKIEKCVVSKSIAK--RKTWSKFGDSAS-DKPGPNPAT 172
           T+Y    D K+V I   Y I KC   K ++K  ++T++ +   AS  +P P+PAT
Sbjct: 78  TDYINAKDAKRVDIKVIYTIRKC---KDLSKFCKETFNLYVYHASQSEPSPDPAT 129


>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 259  KPPSSNVIFKCRTCQGDHLTLYCPFKHTQ 345
            KPP S  + KC  C G H    C F  ++
Sbjct: 1239 KPPQSATVSKCYRCDGKHDPRSCVFSQSK 1267


>SB_51940| Best HMM Match : Glyco_transf_22 (HMM E-Value=1.8)
          Length = 414

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 437 VYLVVISPLCVVKT*LPSVYQTLAFCG 517
           +YLV+++ L V+ T LP +Y T   CG
Sbjct: 324 MYLVLLTVLPVILTVLPGLYNTRVTCG 350



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 437 VYLVVISPLCVVKT*LPSVYQTLAFCG 517
           +YLV+++ L V+ T LP +Y T   CG
Sbjct: 375 MYLVLLTVLPVILTVLPGLYNTRVTCG 401


>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
          Length = 965

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 71  KIEKCVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVF 196
           +I +CVV K +  +       D   D+    P+ TNV  DVF
Sbjct: 518 EISQCVVCKKLRGKPVEQHMADLPPDRTEVAPSFTNVGFDVF 559


>SB_11606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 816

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = +2

Query: 44  KKVKIVRTYKIEKCVVSKSIAK---RKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITS 214
           K  +++R Y+IEK    +S+AK      W KF +       PNP  T   +D    F   
Sbjct: 559 KGYRVIRVYEIEKNPGLRSVAKMGLNCMWEKFVEQ------PNPQRTEYVDDPKAYFALL 612

Query: 215 KEESQRPDD 241
             +S   +D
Sbjct: 613 NNDSIEVND 621


>SB_55305| Best HMM Match : Pre-SET (HMM E-Value=4.6)
          Length = 490

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 47  KVKIVRTYKIEKCVVSKSIAKRKTWSKFGDSASDKPGPNPATTNV 181
           K  I+R ++    ++  + ++R  W  FG +A  K GP   T N+
Sbjct: 351 KGPIIRGFRTSLALIGYAGSERPQWLSFGQNARYK-GPTTVTANI 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,538,537
Number of Sequences: 59808
Number of extensions: 349605
Number of successful extensions: 972
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)