Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120073.Seq
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 52 5e-07
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 32 0.31
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z78545-3|CAB01767.1| 306|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 30 1.2
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 29 2.2
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 2.2
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 29 2.2
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 29 2.2
AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase... 29 2.9
AF025462-1|AAN72423.1| 1068|Caenorhabditis elegans Phospholipase... 29 2.9
U80445-9|AAB37799.1| 264|Caenorhabditis elegans Fk506-binding p... 29 3.8
U80445-8|AAK68259.1| 300|Caenorhabditis elegans Fk506-binding p... 29 3.8
U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical pr... 28 6.6
U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical pr... 28 6.6
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 28 6.6
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 28 6.6
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 28 6.6
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 28 6.6
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 27 8.7
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/64 (40%), Positives = 35/64 (54%)
Frame = +2
Query: 38 DNKKVKIVRTYKIEKCVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSK 217
D + K+V +K+ V K +A RK W KFG + GP ATT VAE+V MQF ++
Sbjct: 39 DGVRWKVVTQFKVINKRVPKVVADRKKWVKFGSCKGEPAGPQVATTYVAEEVDMQFTRNR 98
Query: 218 EESQ 229
Q
Sbjct: 99 AGEQ 102
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
E ++ DL G V ++++A++K TG KGFA+V F+ R DAA+
Sbjct: 189 EDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAAR 232
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKF 632
E D+ L K +G V ++ + +K TG CKGFA V F F
Sbjct: 292 EDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVF 329
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +3
Query: 552 GPVHKLYLAKEKSTGHCKGFAYVHFK 629
GPV + + ++K TG KGFA+V+FK
Sbjct: 271 GPVEAVRIVRDKDTGKGKGFAFVNFK 296
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 32.3 bits (70), Expect = 0.31
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 528 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAA 647
I + + FG + + K K +GH KG A+VHF +A+
Sbjct: 279 IKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEAS 318
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 513 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 626
A +I+ G G V ++ + ++ +GH KGFAYV F
Sbjct: 89 ATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEF 126
>Z78545-3|CAB01767.1| 306|Caenorhabditis elegans Hypothetical
protein M03B6.4 protein.
Length = 306
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +2
Query: 59 VRTYKIEKCVVSKSIAKRKTWSKFGDSASDKP----GPNPATTNVAE 187
+ YKI +S + KRKT KFGD A D P NP TT+ E
Sbjct: 6 ISQYKINISSLSSPL-KRKTTRKFGDDAYDSPKYFMEGNPTTTSTFE 51
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 644
E ++ + FG V ++ +A+ + TG+ KG+AYV F +A A
Sbjct: 45 EKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVA 86
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 525 DIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 626
+I++ KG G + K + K+K T K FAY+ F
Sbjct: 70 EIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEF 103
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFK 629
FGP+ + ++ + +TGH K FA+V ++
Sbjct: 125 FGPIKSINMSWDPATGHHKTFAFVEYE 151
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFK 629
FGP+ + ++ + +TGH K FA+V ++
Sbjct: 125 FGPIKSINMSWDPATGHHKTFAFVEYE 151
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFK 629
FGP+ + ++ + +TGH K FA+V ++
Sbjct: 125 FGPIKSINMSWDPATGHHKTFAFVEYE 151
>AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase c
like protein 1,isoform a protein.
Length = 1075
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +2
Query: 137 SASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDVLSHHPAMLSLSVVHVKETI* 316
+ + P P+P T++ V FI +E P + L P L S +K I
Sbjct: 904 AVNSSPPPSPTTSSAESSVTPLFIIDSDEHGYPAIVTMGTL---PDQLQRSFNKLKNLIA 960
Query: 317 HCIVHLS 337
HC+ LS
Sbjct: 961 HCVTTLS 967
>AF025462-1|AAN72423.1| 1068|Caenorhabditis elegans Phospholipase c
like protein 1,isoform b protein.
Length = 1068
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +2
Query: 137 SASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDVLSHHPAMLSLSVVHVKETI* 316
+ + P P+P T++ V FI +E P + L P L S +K I
Sbjct: 897 AVNSSPPPSPTTSSAESSVTPLFIIDSDEHGYPAIVTMGTL---PDQLQRSFNKLKNLIA 953
Query: 317 HCIVHLS 337
HC+ LS
Sbjct: 954 HCVTTLS 960
>U80445-9|AAB37799.1| 264|Caenorhabditis elegans Fk506-binding
protein family protein5, isoform a protein.
Length = 264
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 32 DNDNKKVKIVRTYKIEKC-VVSKSIAKRKTWSKFGDSASDKPGPN 163
D D ++KI+R K EKC + S+ W K D + G N
Sbjct: 26 DEDGLEIKIIRPIKAEKCPIKSQDGDVLDQWYKLSDKDGKEIGSN 70
>U80445-8|AAK68259.1| 300|Caenorhabditis elegans Fk506-binding
protein family protein5, isoform b protein.
Length = 300
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 32 DNDNKKVKIVRTYKIEKC-VVSKSIAKRKTWSKFGDSASDKPGPN 163
D D ++KI+R K EKC + S+ W K D + G N
Sbjct: 62 DEDGLEIKIIRPIKAEKCPIKSQDGDVLDQWYKLSDKDGKEIGSN 106
>U41263-2|ABB88212.1| 1015|Caenorhabditis elegans Hypothetical
protein T19D12.4b protein.
Length = 1015
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 8 KIVTEYKYDNDNKKVKIV 61
K+V +YKY NDN +V I+
Sbjct: 401 KLVAQYKYGNDNTRVGII 418
>U41263-1|AAC24429.1| 1028|Caenorhabditis elegans Hypothetical
protein T19D12.4a protein.
Length = 1028
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 8 KIVTEYKYDNDNKKVKIV 61
K+V +YKY NDN +V I+
Sbjct: 414 KLVAQYKYGNDNTRVGII 431
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 552 GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
GPV + + ++ +T G+AYV+F+ ADA +
Sbjct: 56 GPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 552 GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
GPV + + ++ +T G+AYV+F+ ADA +
Sbjct: 56 GPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 552 GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
GPV + + ++ +T G+AYV+F+ ADA +
Sbjct: 56 GPVLSIRVCRDNATRLSLGYAYVNFQQPADAER 88
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 522 ADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFK 629
++I++ G V ++ + K+K TG+ K FA+V F+
Sbjct: 60 SEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQ 95
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 525 DIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 626
++++ KG G + + + K+K T K FAY+ F
Sbjct: 76 EVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEF 109
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,619,540
Number of Sequences: 27780
Number of extensions: 257628
Number of successful extensions: 752
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -