Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120073.Seq
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 58 7e-09
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 48 7e-06
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 38 0.004
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 38 0.008
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 37 0.010
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 37 0.013
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 36 0.023
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 34 0.071
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 34 0.094
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 34 0.094
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 33 0.16
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 33 0.22
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 32 0.29
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 32 0.29
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 32 0.38
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 32 0.38
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 31 0.50
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 31 0.50
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 31 0.50
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 31 0.66
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 31 0.88
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 30 1.2
At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putativ... 29 2.7
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 29 3.5
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 29 3.5
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 29 3.5
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 28 4.7
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 28 4.7
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 28 4.7
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 28 4.7
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 27 8.2
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 27 8.2
At1g67370.1 68414.m07669 meiotic asynaptic mutant 1 (ASY1) ident... 27 8.2
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 57.6 bits (133), Expect = 7e-09
Identities = 25/69 (36%), Positives = 46/69 (66%)
Frame = +2
Query: 2 GLKIVTEYKYDNDNKKVKIVRTYKIEKCVVSKSIAKRKTWSKFGDSASDKPGPNPATTNV 181
G+K V EYK++ ++KKVKI T +++K ++K +R++W+KFGD+A ++ + T
Sbjct: 8 GVKKVIEYKFNEEDKKVKITTTTRVQKRALTKQAVERRSWNKFGDAAHEE-SSSYLTMRS 66
Query: 182 AEDVFMQFI 208
ED+ ++ I
Sbjct: 67 TEDIILERI 75
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Frame = +2
Query: 2 GLKIVTEYKYDNDNKKVKIV---RTYKIEKCVVSKSIAKRKTWSKFGDSASDKPGPNPAT 172
GLK EYK++++ KVKI R K+ ++K +R+ W KFGD+A+++ G + T
Sbjct: 39 GLKTTIEYKFNDEENKVKITTRTRVRKLASARLNKRAMERRNWPKFGDAANEEAGSH-LT 97
Query: 173 TNVAEDVFMQFI----TSKEESQRPDDG 244
E++ ++ T +ES+ DG
Sbjct: 98 MVSTEEILLERPRAPGTKADESKATGDG 125
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
E D+ +L FG V ++Y+A ++ TG +GF +V+F R DA +
Sbjct: 226 EPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQR 269
Score = 31.9 bits (69), Expect = 0.38
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Frame = +1
Query: 277 VIFKCRTC--QGDHLTLYCPFKH----TQIXXXXXXXXXXXXXXXXXXSNK--YIPPSSA 432
V+ CR C +GDH T CP+K T + + K Y+PPS
Sbjct: 135 VLMVCRICHKKGDHWTSKCPYKDLAAPTDVFIDKPPTGESSTMSAAPGTGKAAYVPPSMR 194
Query: 433 GRIPGRDQPPV-----RREDVTAIRISNLS 507
G D+ V RR D ++R++NLS
Sbjct: 195 A---GADRSAVGSDMRRRNDENSVRVTNLS 221
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3
Query: 525 DIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
D+ D + FGP+ +YL + TG +GF +V +++ DAA+
Sbjct: 62 DLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAE 103
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +3
Query: 507 HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAA 647
H + D+ + FGPV +YL ++ TG +GF +V F ADAA
Sbjct: 45 HDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAA 91
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 492 YIKP*HFAV-EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 626
Y+ HF + E + + + FGPV + L + TG CKGF ++ F
Sbjct: 268 YVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 507 HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
H + D+ + FGPV +YL ++ TG +GF ++ F ADAA+
Sbjct: 46 HDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAE 93
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 35.9 bits (79), Expect = 0.023
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 507 HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAY 617
++ E I +L++ FGP+ L K++ TG+ KG+A+
Sbjct: 384 YYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAF 420
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 34.3 bits (75), Expect = 0.071
Identities = 14/46 (30%), Positives = 30/46 (65%)
Frame = +3
Query: 513 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
+ E D+ ++ +GP+H + + +E+++G +GFA++ F DAA+
Sbjct: 309 STEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFP-TVDAAR 353
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 555 PVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
P+ L L ++K T +GFA+VHF DA K
Sbjct: 483 PIKDLRLVRDKFTHVSRGFAFVHFYSVEDATK 514
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 33.9 bits (74), Expect = 0.094
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
EA + ++ FG V + +A +++ +G YV FK RADA K
Sbjct: 111 EAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK 154
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 33.9 bits (74), Expect = 0.094
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
EA + ++ FG V + +A +++ +G YV FK RADA K
Sbjct: 111 EAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK 154
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 516 VEAD-IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 644
+++D + D + FG + + K++STG +GF YV F DA
Sbjct: 14 IDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDA 57
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 644
E + D FG V ++ +A +K +G +GF +V F DA
Sbjct: 54 EQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDA 95
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 543 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 644
+G+G + + + +K+TG KGF +V FK R A
Sbjct: 125 EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGA 158
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 543 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 644
+G+G + + + +K+TG KGF +V FK R A
Sbjct: 125 EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGA 158
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
FGPV +Y+ ++ +G +GFA+V F DA +
Sbjct: 70 FGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGE 103
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 513 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
A E D+ G V ++ + +EK +G KG+A+V F+ + AA+
Sbjct: 103 ATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAE 148
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 31.5 bits (68), Expect = 0.50
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 507 HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAY 617
++ E+ + +L++ FG + L K++ TG+ KG+A+
Sbjct: 368 YYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 31.5 bits (68), Expect = 0.50
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 507 HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAY 617
++ E+ + +L++ FG + L K++ TG+ KG+A+
Sbjct: 368 YYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 31.5 bits (68), Expect = 0.50
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 507 HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAY 617
++ E+ + +L++ FG + L K++ TG+ KG+A+
Sbjct: 368 YYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 513 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAA 647
A +DI + G V +++ K TG KGFA+V F + DAA
Sbjct: 342 AKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAA 386
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 522 ADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRAD 641
A +++ GPV + +L K + +GFA+V F + D
Sbjct: 34 AQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQED 73
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 30.7 bits (66), Expect = 0.88
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADA 644
E D+ + + FG V + + +++ TG CKGF +V F DA
Sbjct: 298 EDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDA 338
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
+G V + +AKEK TG +GF +V F D K
Sbjct: 29 YGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVK 62
>At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putative /
O-acetylserine (thiol)-lyase, putative / O-acetylserine
sulfhydrylase, putative identical to SP|O22682 Probable
cysteine synthase, chloroplast precursor {Arabidopsis
thaliana}, similar to SP|P31300 Cysteine synthase,
chloroplast precursor {Capsicum annuum}
Length = 404
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 23 YKYDNDNKKVKIVRTYKIEKCVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAED 190
+ + +D+ VRT + VV K T +K KP P P T VAE+
Sbjct: 34 FSFHHDSSSSLAVRT-PVSSFVVGAISGKSSTGTKSKSKTKRKPPPPPPVTTVAEE 88
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 626
E + D FG V + + K+++TG +GF +V F
Sbjct: 19 EDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 626
E + D FG V + + K+++TG +GF +V F
Sbjct: 19 EDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 492 YIKP*HFAVEADIDDLVKGFGPVHKLYLA--KEKSTGHCKGFAYVHFKFRADAAK 650
Y+K + A DDL FG K+ A + G KGF +V+F+ DAA+
Sbjct: 32 YVK--NLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAAR 84
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRAD 641
E+ I + +GP+ +++L ++ T KG+A++ + D
Sbjct: 151 ESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRD 191
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 626
E + + FG V + + K+++TG +GF +V F
Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF 54
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 626
E + + FG V + + K+++TG +GF +V F
Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF 54
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAA 647
FG + + + +K+TG KG+ +V FK A+AA
Sbjct: 45 FGEIVEAVVITDKNTGRSKGYGFVTFK-EAEAA 76
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 507 HFAVEAD-IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAK 650
HF D + FG V K ++ + +TG G AY+ F R +AA+
Sbjct: 524 HFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFT-RKEAAE 571
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHF 626
FG V ++ + +EK+TG +GF +V F
Sbjct: 29 FGEVLQVTVMREKATGRPRGFGFVAF 54
>At1g67370.1 68414.m07669 meiotic asynaptic mutant 1 (ASY1)
identical to meiotic asynaptic mutant 1 [Arabidopsis
thaliana] GI:7939627; contains Pfam profiles PF02301:
DNA-binding HORMA domain, PF04433: SWIRM domain
Length = 596
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 134 DSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELD 253
DS D P+ + + +++ QFI + E Q DDGE+D
Sbjct: 252 DSVHDDQ-PSDSDSEISQTQENQFIVAPVEKQDDDDGEVD 290
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,682,270
Number of Sequences: 28952
Number of extensions: 235651
Number of successful extensions: 616
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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