Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120072.Seq
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      27   0.20 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   5.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   5.8  

>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 557 CA*TIPCEGKKYWTLQRICLC 619
           CA  I   G K W ++R C+C
Sbjct: 69  CASYIQVSGSKIWQMERSCMC 89


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 565 NYTLRRKKVLDIAKDLLMCTSSSGQMLRKQFNHSMVMV 678
           N T   K V  ++K  L+C  S  + +++Q  HS   +
Sbjct: 5   NITDVLKHVWFLSKLFLLCPRSIDEKIKRQERHSFYKI 42


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 107 KRKTWSKFGDSASDKPGPNPATTNVAED 190
           KRKTW    DS S     +P   + + D
Sbjct: 105 KRKTWKVEEDSPSPTSSVSPEVKDSSRD 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,581
Number of Sequences: 336
Number of extensions: 3189
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)