Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120072.Seq
(723 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 73 3e-13
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 68 7e-12
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 49 3e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 46 2e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 46 2e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 2e-05
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 44 1e-04
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 42 3e-04
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 42 3e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 42 5e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 42 5e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 40 0.001
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 40 0.002
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 40 0.002
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 40 0.002
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 39 0.004
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 39 0.004
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 38 0.007
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 38 0.007
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 38 0.009
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 37 0.016
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 37 0.016
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 37 0.016
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 37 0.016
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 36 0.021
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 36 0.036
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 35 0.047
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 35 0.047
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 35 0.047
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 35 0.047
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 35 0.063
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 35 0.063
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 34 0.083
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 34 0.083
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 34 0.083
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 34 0.083
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 34 0.11
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 34 0.11
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 34 0.11
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 34 0.11
At5g51300.2 68418.m06360 splicing factor-related contains simila... 33 0.14
At5g51300.1 68418.m06359 splicing factor-related contains simila... 33 0.14
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 33 0.14
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 33 0.14
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 33 0.14
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 33 0.14
At2g47310.1 68415.m05906 flowering time control protein-related ... 33 0.14
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 33 0.14
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 33 0.14
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 33 0.19
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 33 0.19
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 33 0.19
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.25
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.25
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 33 0.25
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 33 0.25
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 33 0.25
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 33 0.25
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 32 0.33
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 32 0.33
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 32 0.44
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 32 0.44
At1g71410.1 68414.m08247 protein kinase family protein contains ... 32 0.44
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 31 0.58
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 31 0.58
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 31 0.58
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 31 0.77
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 31 0.77
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 31 0.77
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 31 0.77
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 31 0.77
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 31 0.77
At1g22870.1 68414.m02855 protein kinase family protein contains ... 31 1.0
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 30 1.4
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 30 1.4
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 30 1.4
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 30 1.8
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 30 1.8
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 29 2.4
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 29 2.4
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 29 2.4
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 29 2.4
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 2.4
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 3.1
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 3.1
At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putativ... 29 3.1
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 29 3.1
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 4.1
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 29 4.1
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 29 4.1
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 29 4.1
At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing ... 29 4.1
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 29 4.1
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 28 5.5
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 28 5.5
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 28 5.5
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 28 5.5
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 28 7.2
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 28 7.2
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 28 7.2
At1g79100.1 68414.m09223 arginine/serine-rich protein-related si... 27 9.5
At1g67370.1 68414.m07669 meiotic asynaptic mutant 1 (ASY1) ident... 27 9.5
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 27 9.5
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 72.5 bits (170), Expect = 3e-13
Identities = 32/66 (48%), Positives = 46/66 (69%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
E D+ +L FG V ++Y+A ++ TG +GF +V+F R DA +AI LNG+GYD+LIL
Sbjct: 226 EPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILR 285
Query: 699 VEWSKP 716
VEW+ P
Sbjct: 286 VEWATP 291
Score = 47.6 bits (108), Expect = 8e-06
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Frame = +2
Query: 2 GLKIVTEYKYDNDNKKVKIV---RTYKIEKCVVSKSIAKRKTWSKFGDSASDKPGPNPAT 172
GLK EYK++++ KVKI R K+ ++K +R+ W KFGD+A+++ G + T
Sbjct: 39 GLKTTIEYKFNDEENKVKITTRTRVRKLASARLNKRAMERRNWPKFGDAANEEAGSH-LT 97
Query: 173 TNVAEDVFMQFI----TSKEESQRPDDG 244
E++ ++ T +ES+ DG
Sbjct: 98 MVSTEEILLERPRAPGTKADESKATGDG 125
Score = 31.9 bits (69), Expect = 0.44
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Frame = +1
Query: 277 VIFKCRTC--QGDHLTLYCPFKH----TQIXXXXXXXXXXXXXXXXXXSNK--YIPPSSA 432
V+ CR C +GDH T CP+K T + + K Y+PPS
Sbjct: 135 VLMVCRICHKKGDHWTSKCPYKDLAAPTDVFIDKPPTGESSTMSAAPGTGKAAYVPPSMR 194
Query: 433 GRIPGRDQPPV-----RREDVTAIRISNLS 507
G D+ V RR D ++R++NLS
Sbjct: 195 A---GADRSAVGSDMRRRNDENSVRVTNLS 221
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 67.7 bits (158), Expect = 7e-12
Identities = 30/64 (46%), Positives = 43/64 (67%)
Frame = +3
Query: 525 DIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVE 704
D+ +L + FG V + ++A ++ T +GF +V F R DA +AI LNG+GYD+LIL VE
Sbjct: 189 DLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVE 248
Query: 705 WSKP 716
WS P
Sbjct: 249 WSTP 252
Score = 57.6 bits (133), Expect = 8e-09
Identities = 25/69 (36%), Positives = 46/69 (66%)
Frame = +2
Query: 2 GLKIVTEYKYDNDNKKVKIVRTYKIEKCVVSKSIAKRKTWSKFGDSASDKPGPNPATTNV 181
G+K V EYK++ ++KKVKI T +++K ++K +R++W+KFGD+A ++ + T
Sbjct: 8 GVKKVIEYKFNEEDKKVKITTTTRVQKRALTKQAVERRSWNKFGDAAHEE-SSSYLTMRS 66
Query: 182 AEDVFMQFI 208
ED+ ++ I
Sbjct: 67 TEDIILERI 75
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = +3
Query: 513 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 692
A +DI + G V +++ K TG KGFA+V F + DAA AI+ NGH +
Sbjct: 342 AKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRP 401
Query: 693 LNVEWSKP 716
+ V+W+ P
Sbjct: 402 IAVDWAVP 409
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +3
Query: 522 ADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
A +++ GPV + +L K + +GFA+V F + D +AI+ NG
Sbjct: 34 AQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/63 (30%), Positives = 40/63 (63%)
Frame = +3
Query: 525 DIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVE 704
D+ L +G V +++ +++ TG +GFA+V +K++ +A KA++ L+G D + V+
Sbjct: 31 DLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQ 90
Query: 705 WSK 713
++K
Sbjct: 91 FAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/63 (30%), Positives = 40/63 (63%)
Frame = +3
Query: 525 DIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVE 704
D+ L +G V +++ +++ TG +GFA+V +K++ +A KA++ L+G D + V+
Sbjct: 31 DLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQ 90
Query: 705 WSK 713
++K
Sbjct: 91 FAK 93
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 492 YIKP*HFAVEADIDDLVKGFGPVHKLYLA--KEKSTGHCKGFAYVHFKFRADAAKAIQSL 665
Y+K + A DDL FG K+ A + G KGF +V+F+ DAA+A++SL
Sbjct: 32 YVK--NLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESL 89
Query: 666 NGHGYD 683
NGH +D
Sbjct: 90 NGHKFD 95
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/48 (35%), Positives = 31/48 (64%)
Frame = +3
Query: 525 DIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 668
D+ D + FGP+ +YL + TG +GF +V +++ DAA+A++ +N
Sbjct: 62 DLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMN 109
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
EA + ++ FG V + +A +++ +G YV FK RADA KA ++G D ++
Sbjct: 111 EAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
Query: 699 VEWSKPPQ 722
++ PP+
Sbjct: 171 ATFTLPPR 178
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
EA + ++ FG V + +A +++ +G YV FK RADA KA ++G D ++
Sbjct: 111 EAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
Query: 699 VEWSKPPQ 722
++ PP+
Sbjct: 171 ATFTLPPR 178
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 668
E D+ DL + G + ++ L K++ +G KG+A+V FK + A KAI+ L+
Sbjct: 129 EEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELH 178
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +3
Query: 507 HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 674
H + D+ + FGPV +YL ++ TG +GF ++ F ADAA+A ++G+
Sbjct: 46 HDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGY 101
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +3
Query: 507 HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGH 674
H + D+ + FGPV +YL ++ TG +GF +V F ADAA A ++G+
Sbjct: 45 HDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGY 100
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Frame = +3
Query: 492 YIKP*HFAV-EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ-SL 665
Y+ HF + E + + + FGPV + L + TG CKGF ++ F + + +KA Q +L
Sbjct: 268 YVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF-VQLEHSKAAQIAL 326
Query: 666 NG 671
NG
Sbjct: 327 NG 328
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +3
Query: 531 DDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 710
++L K F + ++ K +T KG+ YV FK R A +A+Q + G + + WS
Sbjct: 251 EELKKAFSQLGEVIYVKIPAT---KGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWS 307
Query: 711 KPP 719
K P
Sbjct: 308 KNP 310
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
+ V + + STG KG+ +V F ++ +A+ +NG
Sbjct: 140 YSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNG 180
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
E DI + FG + L L ++ +G+ KG+A + ++ + +A AI ++NG ++
Sbjct: 108 EEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVS 167
Query: 699 VEWS 710
V+W+
Sbjct: 168 VDWA 171
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +3
Query: 513 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 668
A E D+ G V ++ + +EK +G KG+A+V F+ + AA+AI +LN
Sbjct: 103 ATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLN 154
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 677
E + D FG V ++ +A +K +G +GF +V F DA A +++G G
Sbjct: 54 EQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKG 106
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +3
Query: 507 HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
++ E I +L++ FGP+ L K++ TG+ KG+A+ ++ + A +LNG
Sbjct: 384 YYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNG 438
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 680
FGPV +Y+ ++ +G +GFA+V F DA +A +S+N +
Sbjct: 70 FGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSF 113
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
E + D + FG + + + +K KGFA++ ++ +A KAIQ ++G D ++
Sbjct: 90 EDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIF 149
Query: 699 VEWSK 713
VE +K
Sbjct: 150 VEEAK 154
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 516 VEAD-IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 692
+++D + D + FG + + K++STG +GF YV F DA A++ H + I
Sbjct: 14 IDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK--GEHFLGNRI 71
Query: 693 LNVEWSKPPQ 722
L V+ + P +
Sbjct: 72 LEVKVATPKE 81
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/56 (26%), Positives = 35/56 (62%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKP 716
FG + ++ L K+++ KG+A++ F + DA AI++++ Y+ ++ ++ +KP
Sbjct: 63 FGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKP 118
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 36.7 bits (81), Expect = 0.016
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 555 PVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDH--LILNVEWSK 713
P+ L L ++K T +GFA+VHF DA KA+++ N + IL V ++K
Sbjct: 483 PIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAK 537
Score = 35.5 bits (78), Expect = 0.036
Identities = 17/62 (27%), Positives = 37/62 (59%)
Frame = +3
Query: 513 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 692
+ E D+ ++ +GP+H + + +E+++G +GFA++ F DAA+ + H D ++
Sbjct: 309 STEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFP-TVDAARTMMDRIEH--DGIV 365
Query: 693 LN 698
L+
Sbjct: 366 LD 367
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +3
Query: 522 ADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNV 701
A + L + G V + + +K TG +GF +V A+ A Q NG+ ++ L V
Sbjct: 113 AQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Query: 702 EWSKPP 719
PP
Sbjct: 173 NAGPPP 178
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 528 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVE- 704
+++L G V + + ++ +G KGF +V + KAI SLNG D + V
Sbjct: 265 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 324
Query: 705 -WSKPPQ 722
++PP+
Sbjct: 325 AEARPPR 331
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +3
Query: 522 ADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNV 701
A + L + G V + + +K TG +GF +V A+ A Q NG+ ++ L V
Sbjct: 113 AQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Query: 702 EWSKPP 719
PP
Sbjct: 173 NAGPPP 178
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 528 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVE- 704
+++L G V + + ++ +G KGF +V + KAI SLNG D + V
Sbjct: 273 LENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSE 332
Query: 705 -WSKPPQ 722
++PP+
Sbjct: 333 AEARPPR 339
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 36.3 bits (80), Expect = 0.021
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 668
E+ + DL PVH L + ++ T G+AYV+F DA++A++SLN
Sbjct: 58 ESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESLN 106
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 35.5 bits (78), Expect = 0.036
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 573 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSK 713
L K++ T KGF ++ F+ DA KA+++LNG + ++ VE +K
Sbjct: 97 LIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 35.1 bits (77), Expect = 0.047
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
E D+ + +G + + L ++K TG KGFA++ ++ + A+ +LNG
Sbjct: 49 EGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNG 99
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 35.1 bits (77), Expect = 0.047
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 543 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 659
+G+G + + + +K+TG KGF +V FK R A +A++
Sbjct: 125 EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 35.1 bits (77), Expect = 0.047
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 543 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 659
+G+G + + + +K+TG KGF +V FK R A +A++
Sbjct: 125 EGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 35.1 bits (77), Expect = 0.047
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
E D+ + + FG V + + +++ TG CKGF +V F DA A+ +LNG
Sbjct: 298 EDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL-NLNG 346
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 34.7 bits (76), Expect = 0.063
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = +3
Query: 522 ADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNV 701
A + L + G V + + +K TG +GF +V ++ A Q NG+ D L V
Sbjct: 105 AQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
Query: 702 EWSKPP 719
PP
Sbjct: 165 NAGPPP 170
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 34.7 bits (76), Expect = 0.063
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 594 GHCKGFAYVHFKFRADAAKAIQSLNGHGYD 683
G KGF +V+F+ DAA+A+ +LNG +D
Sbjct: 261 GKSKGFGFVNFENSDDAARAVDALNGKTFD 290
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 528 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
+ + FGP+ +A + S G KG+ +V + A AI LNG
Sbjct: 149 LHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNG 195
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +3
Query: 507 HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
++ E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +LNG
Sbjct: 368 YYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 422
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +3
Query: 507 HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
++ E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +LNG
Sbjct: 368 YYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 422
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 34.3 bits (75), Expect = 0.083
Identities = 15/55 (27%), Positives = 32/55 (58%)
Frame = +3
Query: 507 HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
++ E+ + +L++ FG + L K++ TG+ KG+A+ ++ + A +LNG
Sbjct: 368 YYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNG 422
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 34.3 bits (75), Expect = 0.083
Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Frame = +3
Query: 516 VEADI-DDLVKG----FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
++AD+ +DL++ FG + L +AK+++ C+G+A+V+F DA +A +++NG
Sbjct: 208 LDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETVNG 263
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 507 HFAVEAD-IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 683
HF D + FG V K ++ + +TG G AY+ F R +AA+ SL+G +
Sbjct: 524 HFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFT-RKEAAENALSLDGTSFM 582
Query: 684 HLILNV 701
IL +
Sbjct: 583 SRILKI 588
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
E + D L K F +AK +K TG KG+ +V F AD A A++ +NG
Sbjct: 147 EVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNG 200
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 513 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 692
+ E + +G V K+ + +K KGFAYV F + +A KA+ LN D +
Sbjct: 32 STEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRV 91
Query: 693 LNVEWSK 713
+ ++ +K
Sbjct: 92 VILDTTK 98
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/69 (24%), Positives = 35/69 (50%)
Frame = +3
Query: 510 FAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHL 689
+ +A+I+ ++ +G V ++ E+ +G KG+ V F A AA + +NG ++
Sbjct: 212 WTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGMNGFIFNGK 271
Query: 690 ILNVEWSKP 716
V ++ P
Sbjct: 272 ACVVAFASP 280
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 534 DLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD--HLILNVEW 707
+L FG + + K++ TG KG+ +V + A A+Q++NG+ ++ L + +
Sbjct: 498 NLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAG 557
Query: 708 SKPP 719
PP
Sbjct: 558 KSPP 561
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 33.5 bits (73), Expect = 0.14
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +3
Query: 534 DLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD--HLILNVEW 707
+L FG + + K++ TG KG+ +V + A A+Q++NG+ ++ L + +
Sbjct: 498 NLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAG 557
Query: 708 SKPP 719
PP
Sbjct: 558 KSPP 561
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 699 V 701
V
Sbjct: 79 V 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 699 V 701
V
Sbjct: 79 V 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
+ D+ FG V + ++ +G +GF +V FK AI+ +NG D ++
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVIT 78
Query: 699 V 701
V
Sbjct: 79 V 79
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +3
Query: 606 GFAYVHFKFRADAAKAIQSLNG--HGYDHLILNVEWSK 713
G+A+V+F+ DA AI+ L+ GY+ L+VEW+K
Sbjct: 36 GYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAK 73
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.5 bits (73), Expect = 0.14
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = +3
Query: 525 DIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
+++++ +G + +Y+A + C+G+A+V F + A AI++LNG
Sbjct: 222 EVNEVFSRYGIIEDIYMALDDMK-ICRGYAFVQFSCKEMALAAIKALNG 269
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 683
E I+ FG V + ++ TG KGF +V FK AI +NG D
Sbjct: 57 EQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELD 111
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
+A + D F + ++ TG +GF +V F+ + DA AI +NG +
Sbjct: 161 DAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 220
Query: 699 VEWS 710
W+
Sbjct: 221 CNWA 224
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = +3
Query: 510 FAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHL 689
+ +A+++ + +G V ++ EK++G KG+ V F A+ +LNG+ ++
Sbjct: 244 WTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGR 303
Query: 690 ILNVEWSKP 716
VE++ P
Sbjct: 304 PCVVEYASP 312
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 668
FG + + + +K+TG KG+ +V FK A +A Q++N
Sbjct: 45 FGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNMN 84
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 659
+G V + +AKEK TG +GF +V F D KA++
Sbjct: 29 YGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALR 65
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 32.7 bits (71), Expect = 0.25
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +3
Query: 501 P*HFAVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGY 680
P E + D+ G + + L K KS G + FAY+ F+ +A AI +N
Sbjct: 10 PSKHVTEERLRDVFSRKGEIADVKL-KRKSDGKSRQFAYIGFRTEQEAQDAITYVNKCFI 68
Query: 681 DHLILNVEWSKPP 719
D ++VE + PP
Sbjct: 69 DTYRISVEVADPP 81
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHG 677
+ D+ FG V + ++ +G +GF +V FK AI+ +NG G
Sbjct: 19 DEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGSG 71
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 32.7 bits (71), Expect = 0.25
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +3
Query: 513 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSL-NGHGYD-H 686
A + ++ L FG + + L K K+ G G+A+V F + +A A ++L + H Y H
Sbjct: 680 ATKRELRQLFSPFGQIKSMRLPK-KNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRH 738
Query: 687 LILNVEWS 710
L+L EW+
Sbjct: 739 LVL--EWA 744
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD--HLI 692
E+ I + +GP+ +++L ++ T KG+A++ + D A + +G D ++
Sbjct: 151 ESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVL 210
Query: 693 LNVE 704
++VE
Sbjct: 211 VDVE 214
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 582 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 710
++ TG +GF +V F+ + DA AI +NG + W+
Sbjct: 178 DQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 528 IDDLVKGFGPVHKLYLA-KEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVE 704
+ ++ GPV L K+KS+ + +VH+ R AA AI SLNG + V
Sbjct: 75 LQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRSAALAILSLNGRHLFGQPIKVN 129
Query: 705 WS 710
W+
Sbjct: 130 WA 131
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 582 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 710
++ TG +GF +V F+ + DA AI +NG + W+
Sbjct: 186 DQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 32.3 bits (70), Expect = 0.33
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 513 AVEADIDDLVKGF---GPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 683
A D D L + F G V + ++ TG +GF +V F A+ AIQ+L+G
Sbjct: 48 AYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLH 107
Query: 684 HLILNVEWS 710
++ V ++
Sbjct: 108 GRVVKVNYA 116
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 528 IDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEW 707
+ D FG + + ++ +G KGF +V + DA KA +N D ++ V+
Sbjct: 50 LQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDP 109
Query: 708 SKP 716
++P
Sbjct: 110 ARP 112
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 31.9 bits (69), Expect = 0.44
Identities = 15/63 (23%), Positives = 33/63 (52%)
Frame = +3
Query: 534 DLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSK 713
D + +G + + + +K +G +GF ++ F + +AI ++NG D + V+ ++
Sbjct: 25 DAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQ 84
Query: 714 PPQ 722
P Q
Sbjct: 85 PHQ 87
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = +3
Query: 519 EADIDDLVKG----FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 683
EA DD +K +G + + ++ G + F +V+F+ DAA+A+++LNG +D
Sbjct: 234 EATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEALNGKKFD 291
>At1g71410.1 68414.m08247 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 909
Score = 31.9 bits (69), Expect = 0.44
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 478 VTAIRISNLSILRLKLILMTLSKVLALCINYTLRRKKVLDIAKDLLMCTSSSGQMLRKQF 657
V A+R++ ++L L ++ TL K A+ I T++R +D + LMCT + + KQ+
Sbjct: 517 VAAVRVN--ALLCLAELVQTLDKPAAIEILETIQRCTAVDRSAPTLMCTLAVANAILKQY 574
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 683
+G V + ++ TG +GF +V FK AI+ +NG D
Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLD 75
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 31.5 bits (68), Expect = 0.58
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYD 683
+G V + ++ TG +GF +V FK AI+ +NG D
Sbjct: 31 YGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLD 75
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 31.5 bits (68), Expect = 0.58
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +3
Query: 492 YIKP*HFAV-EADIDDLVKGFGPVHKLYLA-KEKSTGHCKGFAYVHFKFRADAAKAIQSL 665
Y+ H V E + ++ G GPV L KEKS+ + +VH+ R A AI SL
Sbjct: 57 YVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS-----YGFVHYFDRRSAGLAILSL 111
Query: 666 NGHGYDHLILNVEWS 710
NG + V W+
Sbjct: 112 NGRHLFGQPIKVNWA 126
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 582 EKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 710
++ TG +GF +V F+ + DA AI + G + W+
Sbjct: 173 DQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 603 KGFAYVHFKFRADAAKAIQSLNGHGY 680
KGF +V + +AA AIQ N H Y
Sbjct: 297 KGFGFVRYSTHVEAALAIQMGNTHSY 322
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 31.1 bits (67), Expect = 0.77
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
E + + G V + + ++ + KGF +V F +A KA+ NG + +
Sbjct: 47 EQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIF 106
Query: 699 VEWSKPPQ 722
V+++K Q
Sbjct: 107 VDYAKAKQ 114
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.1 bits (67), Expect = 0.77
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
++ + FG V + + ++ TG +GF +V F A AI+ ++G
Sbjct: 48 DSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 31.1 bits (67), Expect = 0.77
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
++ + FG V + + ++ TG +GF +V F A AI+ ++G
Sbjct: 48 DSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDG 98
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 31.1 bits (67), Expect = 0.77
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = +3
Query: 513 AVEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLI 692
A E + ++ GPV L ++ TG KG+ + +K A A ++L + +
Sbjct: 20 ATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQSYEINGRQ 79
Query: 693 LNVEWSK 713
L V++++
Sbjct: 80 LRVDFAE 86
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
E + +L F P K+ AK +K+TG K F ++ + +A A AI ++NG
Sbjct: 349 EFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNG 402
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAK---EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
E + +L F P K+ AK +K+TG K F ++ + +A A AI ++NG
Sbjct: 340 EFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNG 393
>At1g22870.1 68414.m02855 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 913
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +1
Query: 478 VTAIRISNLSILRLKLILMTLSKVLALCINYTLRRKKVLDIAKDLLMCTSSSGQMLRKQF 657
V A+R++ ++L L ++ TL K+ I T++R +D + LMCT + + KQ+
Sbjct: 517 VAAVRVN--ALLCLAELVQTLDKLAVTEILQTIQRCTAVDRSAPTLMCTLAIANAILKQY 574
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILN 698
E D+ D PV ++L + TG +AY++F A+ A+ LN +
Sbjct: 34 EKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMR 93
Query: 699 VEWSK 713
+ WS+
Sbjct: 94 IMWSQ 98
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 606 GFAYVHFKFRADAAKAIQSLNG--HGYDHLILNVEWSK 713
G+A+V+F+ DA AI+ + GY L+VEW+K
Sbjct: 10 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 47
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 606 GFAYVHFKFRADAAKAIQSLNG--HGYDHLILNVEWSK 713
G+A+V+F+ DA AI+ + GY L+VEW+K
Sbjct: 36 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 73
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 510 FAVE-ADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 659
F +E AD+++ K G V + + + G +GF +V F +A KA++
Sbjct: 306 FNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 597 HCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEW 707
H KG YVH++ A A QS+NG + +N E+
Sbjct: 333 HLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEF 369
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/61 (24%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Frame = +3
Query: 543 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG---HGYDHLILNVEWSK 713
+GFG + ++ + +K + KG+A++ + A A++ +NG +G+ ++++V +K
Sbjct: 303 EGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGW-MIVVDVAKTK 361
Query: 714 P 716
P
Sbjct: 362 P 362
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 603 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 719
KG +V F R A AI+SLNG + + W + P
Sbjct: 356 KGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP 394
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 668
FG + + + +K+TG KG+ +V F+ A +A+ N
Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 668
FG + + + +K+TG KG+ +V F+ A +A+ N
Sbjct: 40 FGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPN 79
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLN 668
FG + + + +K+TG KG+ +V F+ A +A+ N
Sbjct: 40 FGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPN 79
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA-IQSLNGHGYDHLIL 695
E + + FG V + + K+++TG +GF +V F AD A A I H D ++
Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF---ADPAVAEIVITEKHNIDGRLV 75
Query: 696 NVEWSKP 716
+ + P
Sbjct: 76 EAKKAVP 82
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKA-IQSLNGHGYDHLIL 695
E + + FG V + + K+++TG +GF +V F AD A A I H D ++
Sbjct: 19 EERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF---ADPAVAEIVITEKHNIDGRLV 75
Query: 696 NVEWSKP 716
+ + P
Sbjct: 76 EAKKAVP 82
>At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putative /
O-acetylserine (thiol)-lyase, putative / O-acetylserine
sulfhydrylase, putative identical to SP|O22682 Probable
cysteine synthase, chloroplast precursor {Arabidopsis
thaliana}, similar to SP|P31300 Cysteine synthase,
chloroplast precursor {Capsicum annuum}
Length = 404
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +2
Query: 23 YKYDNDNKKVKIVRTYKIEKCVVSKSIAKRKTWSKFGDSASDKPGPNPATTNVAED 190
+ + +D+ VRT + VV K T +K KP P P T VAE+
Sbjct: 34 FSFHHDSSSSLAVRT-PVSSFVVGAISGKSSTGTKSKSKTKRKPPPPPPVTTVAEE 88
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = +3
Query: 516 VEADID-----DLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 659
V ADID + FG + + L +K+TG KGFA ++ A KA++
Sbjct: 234 VSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
+G V + +++TG KG+ +V F + +A+ +NG
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNG 218
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 626
E + D FG V + + K+++TG +GF +V F
Sbjct: 19 EDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 519 EADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHF 626
E + D FG V + + K+++TG +GF +V F
Sbjct: 19 EDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVF 54
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 543 KGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
+ FG V + +K+TG K F +V + +A A AI +NG
Sbjct: 370 QSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNG 412
>At1g70200.1 68414.m08078 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 538
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 600 CKGFAYVHFKFRADAAKAIQSLNG 671
CKGFA+V FK DA + ++ G
Sbjct: 232 CKGFAHVDFKTEIDANRFVKQFTG 255
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
FG + +A + TG KG+ +V F+ A AI LNG
Sbjct: 159 FGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNG 198
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +3
Query: 573 LAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
+ +++TG KG+ +V F ++ +A+ +NG
Sbjct: 205 VVNDRTTGRSKGYGFVRFADESEQIRAMTEMNG 237
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +3
Query: 531 DDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWS 710
DDL FG +L K + C +V + RA A +A+ LNG + + W
Sbjct: 292 DDLKSVFGQFGELVHVKIPAGKRC---GFVQYANRACAEQALSVLNGTQLGGQSIRLSWG 348
Query: 711 KPP 719
+ P
Sbjct: 349 RSP 351
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 582 EKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
E++TG +GF ++ F+ + A+ ++NG
Sbjct: 253 ERNTGRSRGFGFISFESAENVQSALATMNG 282
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQ 659
FG V ++ + +EK+TG +GF +V F A + +Q
Sbjct: 29 FGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = +3
Query: 516 VEADIDDLVKGFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNGHGYDHLIL 695
+++ + FG + ++++ TG G+AY+ K A+ A + + G+D ++
Sbjct: 250 IKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEGAEKALELGRHDVGGWDLVVG 309
Query: 696 NVE 704
E
Sbjct: 310 KAE 312
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +3
Query: 546 GFGPVHKLYLAKEKSTGHCKGFAYVHFKFRADAAKAIQSLNG 671
G+G V + +++ T +GF +V + ++A A+ ++G
Sbjct: 25 GYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDG 66
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 603 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 719
KG +V F R +A +A++ LNG + + W + P
Sbjct: 341 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNP 379
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 603 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 719
KG +V F R +A +A++ LNG + + W + P
Sbjct: 339 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNP 377
>At1g79100.1 68414.m09223 arginine/serine-rich protein-related
similar to arginine/serine-rich protein [Arabidopsis
thaliana] GI:6601502
Length = 70
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 549 FGPVHKLYLAKEKSTGHCKGFAYVHFKFR-ADAAKAIQSLNGHGYDHLI 692
FG + + LA +++ +G AYV FK + ADA K ++G GY I
Sbjct: 11 FGEIIHVQLAIDRAANLSRGDAYVEFKAKIADAEKPQLYMDG-GYPRRI 58
>At1g67370.1 68414.m07669 meiotic asynaptic mutant 1 (ASY1)
identical to meiotic asynaptic mutant 1 [Arabidopsis
thaliana] GI:7939627; contains Pfam profiles PF02301:
DNA-binding HORMA domain, PF04433: SWIRM domain
Length = 596
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 134 DSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELD 253
DS D P+ + + +++ QFI + E Q DDGE+D
Sbjct: 252 DSVHDDQ-PSDSDSEISQTQENQFIVAPVEKQDDDDGEVD 290
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 603 KGFAYVHFKFRADAAKAIQSLNGHGYDHLILNVEWSKPP 719
KG +V F R A +AI +LNG + + W + P
Sbjct: 362 KGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP 400
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,470,374
Number of Sequences: 28952
Number of extensions: 275418
Number of successful extensions: 837
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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