Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120071.Seq
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       54   2e-09
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 54.0 bits (124), Expect = 2e-09
 Identities = 25/59 (42%), Positives = 36/59 (61%)
 Frame = +2

Query: 341 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 517
           +N +V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++ +A
Sbjct: 180 DNIQVNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMA 238



 Score = 38.7 bits (86), Expect = 6e-05
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
 Frame = +3

Query: 522 QTGSGKTLAYILPAIVHINNQPP----IRRGDGPIALVLAPTRELAQQIQQVAADFGHTS 689
           QTGSGKT A+ +P I  +  +            P  ++++PTREL  QI Q    F   S
Sbjct: 241 QTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNS 300

Query: 690 YVRNTCVFGGAPKREQARDLEKG 758
            ++    +GG     Q   L  G
Sbjct: 301 ILKTVVAYGGTSVMHQRGKLSAG 323



 Score = 28.7 bits (61), Expect = 0.066
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 746 LGEGSRIVIATPGRLIDF 799
           L  G  I++ATPGRL+DF
Sbjct: 320 LSAGCHILVATPGRLLDF 337


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 460 DAYSSSRLADSYVWKELVGVLKRVPA 537
           ++ S  + A +YVWK   G L++ P+
Sbjct: 205 ESISYEQTAITYVWKNDEGTLRKSPS 230


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 460 DAYSSSRLADSYVWKELVGVLKRVPA 537
           ++ S  + A +YVWK   G L++ P+
Sbjct: 205 ESISYEQTAITYVWKNDEGTLRKSPS 230


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 460 DAYSSSRLADSYVWKELVGVLKRVPA 537
           ++ S  + A +YVWK   G L++ P+
Sbjct: 256 ESISYEQTAITYVWKNDEGTLRKSPS 281


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 460 DAYSSSRLADSYVWKELVGVLKRVPA 537
           ++ S  + A +YVWK   G L++ P+
Sbjct: 205 ESISYEQTAITYVWKNDEGTLRKSPS 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,519
Number of Sequences: 438
Number of extensions: 4604
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)