Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120070X.Seq
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996...    28   5.4  
02_01_0437 + 3171932-3172189,3174102-3174302,3174708-3174989           28   5.4  
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002...    27   7.2  
05_06_0074 + 25375431-25375631,25375785-25376195,25376474-253765...    27   9.5  

>12_01_1019 -
           10398880-10399314,10399401-10399481,10399560-10399652,
           10399784-10399999,10403837-10403935,10404244-10404867,
           10404946-10405033,10405167-10405430,10406437-10406504
          Length = 655

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 36  RQHHP-PRRHGGSPSGNRHQQFPSQASTLPISGKFQAHDINNQQSQL 173
           R H P P R   S S N +QQ   + ++   +   Q + +  QQ+QL
Sbjct: 549 RGHGPKPNRRASSTSANTYQQMEEELASTKQTAAVQQNQLAVQQNQL 595


>02_01_0437 + 3171932-3172189,3174102-3174302,3174708-3174989
          Length = 246

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 54  RRHGGSPSGNRHQQFPSQAS 113
           RRHGGS SGNR    P  A+
Sbjct: 42  RRHGGSGSGNRGTTLPRAAT 61


>03_06_0523 +
           34499533-34499705,34499808-34499917,34500037-34500224,
           34500984-34501451
          Length = 312

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 36  RQHHPPRRHGGSPSGNRHQQFPSQA 110
           R H PP  H   PS    Q+FP +A
Sbjct: 178 RHHEPPMSHKKFPSSAGEQRFPDRA 202


>05_06_0074 +
           25375431-25375631,25375785-25376195,25376474-25376589,
           25377016-25377064,25377722-25378247,25378339-25379060
          Length = 674

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 63  GGSPSGNRHQQFPSQAST 116
           G SPS +RHQQF + A T
Sbjct: 20  GSSPSSSRHQQFRNLAKT 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,838,829
Number of Sequences: 37544
Number of extensions: 293902
Number of successful extensions: 801
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)