Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120069.Seq
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888 29 3.1
09_04_0726 + 19758916-19759098,19759774-19760318,19760581-197614... 29 4.1
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678 29 4.1
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 7.1
10_06_0007 + 9510385-9510535,9510860-9511433,9511553-9511565 28 7.1
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471 28 7.1
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 28 9.4
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760... 28 9.4
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206 28 9.4
>12_02_0986 + 25055674-25056571,25057741-25057782,25058651-25059888
Length = 725
Score = 29.5 bits (63), Expect = 3.1
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +1
Query: 658 YSLLNETFNNNVAPLLSSIYDEC*RAISSLKIWL 759
Y+++ ++FN+ + + S+ C R +S ++WL
Sbjct: 92 YAVVGKSFNSTASTFVVSLLPSCNRTVSDARLWL 125
>09_04_0726 +
19758916-19759098,19759774-19760318,19760581-19761492,
19762067-19762328
Length = 633
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 547 CRLKTTMSIGRPFFTHLFSVIKN 479
C+LK + +PFFT LFS +KN
Sbjct: 325 CQLKYSHDTNKPFFTALFSHMKN 347
>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
Length = 261
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 341 KKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 475
+ I+ N Y+ +W T+ QP S W L K + A +V
Sbjct: 133 RSSTISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +2
Query: 431 MWDLVKNTPELADFVFIFDHTEKMGKKWPTDRHRRLQATTQQFQRAKKDRLRCLPTQ 601
MW K+TP D F+ +K W T+ + L + + +DR+ LP Q
Sbjct: 1544 MWQNSKSTPTPKDCAAFFEFVDK---NWNTEIGKYLAGSITKVPVCSEDRILLLPKQ 1597
>10_06_0007 + 9510385-9510535,9510860-9511433,9511553-9511565
Length = 245
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 248 NCFVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTK 397
N F+N L++ ++ + N M M+ + KRK+ + +L+ W K
Sbjct: 15 NDFINTLDEVGLHNLDNAMEAMEVDLGTGKRKRYGEGESAKVLWEQWVEK 64
>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
Length = 331
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 389 YTKIKQPEWPSSPAMWDLVKNTPELADFVFI-FDHTEK 499
+ + +PEWPSS A+ N PEL V + D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206
>11_06_0634 -
25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -2
Query: 574 FFCSLELLRCRLKTTMSIGRPFFTHLFSVIKNEHK 470
FFCS +LLR + R L VI EHK
Sbjct: 623 FFCSADLLRPDFSGGEEVERLAMAELIEVISEEHK 657
>11_02_0036 +
7599646-7599950,7600106-7600145,7600403-7600437,
7600789-7601189,7601281-7601361,7601451-7601536
Length = 315
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 505 THLFSVIKNEHKICQFGRVFHQIP 434
TH F +K E+ IC F R IP
Sbjct: 198 THSFDAMKKEYYICGFARSIESIP 221
>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
Length = 961
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 29 RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 157
+ FIT C+ + +KN +FQR T+I G G +
Sbjct: 803 KTAFITRIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 845
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,093,873
Number of Sequences: 37544
Number of extensions: 424999
Number of successful extensions: 1103
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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