Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120068.Seq
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23270.1 68416.m02933 regulator of chromosome condensation (R...    31   1.2  
At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ...    30   2.1  
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ...    30   2.1  
At2g36400.1 68415.m04467 expressed protein nearly identical to t...    29   4.8  
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot...    29   4.8  
At1g02800.1 68414.m00237 endo-1,4-beta-glucanase / cellulase (CE...    29   4.8  
At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam PF05...    28   6.3  

>At3g23270.1 68416.m02933 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1); similar to
           zinc finger protein (GI:15811367) [Arabidopsis
           thaliana]; similar to chromosome condensation regulator
           protein (GI:22770461) [Cicer arietinum]
          Length = 1045

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +1

Query: 424 QAEQLIFHLIYNNEE-AVNVICDNLKYTEVSQAARNGYTQRLRNYKKHS 567
           + + L F L+YNN E ++++IC +   TEV  AA     ++ RN +  S
Sbjct: 82  EKDHLSFSLLYNNRERSLDLICKDKAETEVWFAALKFLIEKSRNRRARS 130


>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 361

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 364 RILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 486
           R ++ + T+Y + FNL S   A + + HLI + +E + V+C
Sbjct: 147 RKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 494

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +1

Query: 364 RILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 486
           R ++ + T+Y + FNL S   A + + HLI + +E + V+C
Sbjct: 147 RKVMVTLTDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At2g36400.1 68415.m04467 expressed protein nearly identical to
           transcription activator GRL3 [Arabidopsis thaliana]
           GI:21539884 (unpublished); supporting cDNA
           gi|21539883|gb|AY102636.1|
          Length = 398

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +2

Query: 35  RDFFLNHKIAVVHIYNGNNMALMPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 214
           RD F  HK    H++ G N +  PV   P  +       AS V+  A  T  +  S  A+
Sbjct: 162 RDVFAGHKYCERHMHRGRNRSRKPV-ETPTTVNATATSMASSVAAAATTTTATTTSTFAF 220

Query: 215 HDDG 226
              G
Sbjct: 221 GGGG 224


>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487; contains
           prenyl group binding site (CAAX box) Prosite:PS00294
          Length = 769

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +1

Query: 499 YTEVSQA--ARNG--YTQRLRNYKKHSRHHKPEHVLFACVARR 615
           YTE S A    +G   + + +++K+H RHHK + +   CV +R
Sbjct: 320 YTEQSAAENTEDGGKASTKQKSHKRHGRHHKSDCMCAICVLKR 362


>At1g02800.1 68414.m00237 endo-1,4-beta-glucanase / cellulase (CEL2)
           identical to endo-1,4-beta glucanase; ATCEL2 GI:3132891
           from [Arabidopsis thaliana]
          Length = 501

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +1

Query: 526 NGYTQRLRNYKKHSRHHKPEHVLFACVARRIAFF---RRDQRPNASRWCWRS 672
           NG++        H RHH   H     +++ I FF   R  + P   R  WRS
Sbjct: 22  NGFSSSSSRPSIHHRHHLDNHNYKDALSKSILFFEGQRSGKLPPNQRMTWRS 73


>At4g09150.1 68417.m01515 T-complex protein 11 contains Pfam
           PF05794: T-complex protein 11
          Length = 1097

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = +1

Query: 496 KYTEVSQAARNGYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFRRDQRPNASR 657
           K  E  QAA+NG  QR+   +        E VL A   R + F    QR  A R
Sbjct: 115 KMDEARQAAKNGLEQRVEKERDELESKVEERVLKAEKNRMLLFKAMAQRRAAKR 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,020,422
Number of Sequences: 28952
Number of extensions: 345659
Number of successful extensions: 812
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)