Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120067.Seq
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 35 0.015
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 31 0.14
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 31 0.19
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 29 1.0
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 28 1.3
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 28 1.8
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 28 1.8
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 27 2.3
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce... 27 4.0
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 4.0
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 27 4.0
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 7.1
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 7.1
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 34.7 bits (76), Expect = 0.015
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 625 ECNVCKEISTDERFLKPKEC--CEYAICNACCVTMWKTATTHAKCPAC 762
EC +C + + ER L K C C + +A C+ W ++ ++CP C
Sbjct: 1557 ECAICYSVLSVERTLPNKRCGTCRHKF-HASCLYKWFKSSNSSRCPLC 1603
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 622 YECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCPACGHRIN 777
Y+C +C + S + P C + CN C ++ T KCP C +++
Sbjct: 204 YKCVICLD-SPENLSCTP---CGHIFCNFCILSALGTTAATQKCPVCRRKVH 251
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 31.1 bits (67), Expect = 0.19
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +1
Query: 622 YECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKCP 756
Y CNVC + T ++ EC ++ +C C + T H P
Sbjct: 6 YHCNVCAQDITRSIHIRCVECVDFDLCIPCFTSGASLGTHHPSHP 50
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 332 HHFIFDAQRIIQCIKEIEGAYG 397
HH+++D+QRII + + G YG
Sbjct: 302 HHYLYDSQRIIFVQQSLGGLYG 323
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = +2
Query: 674 QKNVANTLYATRAALPCGKRPPRTQSVQRADIV 772
QKN+ + L++ + LPC + R ++++ I+
Sbjct: 338 QKNIVDDLFSVKKPLPCSPKSKRVKTLENLSIM 370
>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 232
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Frame = +1
Query: 613 SVLYECNVCKEI-----STDERFLKPKECCEYAICNAC--CVTMWKTAT 738
S LYECN C+EI D + CC++ C C T W AT
Sbjct: 179 SNLYECNACREIVIAGYVCDCGYCLHVYCCKHLAHVNCINCNTPWANAT 227
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 685 CEYAICNACCVTMWKTATTHAKCPACGHRI 774
C + C AC ++ K + CP C HRI
Sbjct: 213 CGHTYCYACIMSRLKLVN-NVSCPICKHRI 241
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 660 KIFKAKRMLRIRYMQRVLRYHVENGHHARKVSSVRTSYK 776
K+F +L I+Y+ +VL YHV A+ + T K
Sbjct: 227 KVFNDLLLLAIQYVPKVLNYHVPIQEDAKGKKFINTDSK 265
>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 459
Score = 26.6 bits (56), Expect = 4.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 736 TTHAKCPACGHRINKH 783
T HA CP+C H+ + H
Sbjct: 254 TFHATCPSCSHQCDTH 269
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 550 FIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFL-KPKECCEYAICNACCVTMW 726
FI KLE + + + +++ CN C +++ R K C CC+++
Sbjct: 1214 FIPKLEMLKFNAHEFSSPSEKTLVNHCNSCNSTTSNTRICEKCYSLVPRMSCTFCCLSI- 1272
Query: 727 KTATTHAKCPACG 765
H C CG
Sbjct: 1273 -----HGLCIVCG 1280
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 668 KNLSSVDISLQTLHSYKTELSTNKFITLT 582
KNLS++ L+T +S+ ELS + ITL+
Sbjct: 303 KNLSTIQSPLKTSNSFFKELSPHSQITLS 331
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +1
Query: 589 VMNLFVDNSVLYECNVCKEISTDERFLKPKECCEYAICNACCVTMWKTATTHAKC 753
++ F +NS + N+C+ S +F+ E+ +C C ++ + A + C
Sbjct: 3258 ILKPFFENSKFTKQNLCESASIIVQFITDLTVGEFQLCLKCLLSFSQHAASLRIC 3312
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 535 SNCLLFIEKLETINKTVKVMNLFVDNSVLYECNVCKEISTDERFLK 672
S LF ++ + ++M +++CNV E+ D+RFL+
Sbjct: 837 SGLKLFKLGIKLCTRNEQIMKTIWSFIHVHDCNVISEVIPDQRFLR 882
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,321,463
Number of Sequences: 5004
Number of extensions: 71290
Number of successful extensions: 227
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -