Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120066.Seq
         (806 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O10372 Cluster: Occlusion-derived virus envelope protei...   136   6e-31
UniRef50_Q0ILA6 Cluster: Odv-e27; n=2; Nucleopolyhedrovirus|Rep:...   127   4e-28
UniRef50_Q462F3 Cluster: Orf13; n=14; Nucleopolyhedrovirus|Rep: ...   120   6e-26
UniRef50_Q6QXM7 Cluster: ORF87; n=8; Granulovirus|Rep: ORF87 - A...    56   1e-06
UniRef50_UPI00006CAFD7 Cluster: hypothetical protein TTHERM_0046...    41   0.042
UniRef50_Q6JPA5 Cluster: Occlusion-derived virus envelope/capsid...    39   0.13 
UniRef50_Q1A4L9 Cluster: ODV-E27; n=1; Choristoneura occidentali...    39   0.13 
UniRef50_Q1FFH9 Cluster: Abortive infection protein; n=1; Clostr...    33   8.5  
UniRef50_A6LV29 Cluster: Citrate transporter; n=1; Clostridium b...    33   8.5  

>UniRef50_O10372 Cluster: Occlusion-derived virus envelope protein
           E27; n=12; Nucleopolyhedrovirus|Rep: Occlusion-derived
           virus envelope protein E27 - Orgyia pseudotsugata
           multicapsid polyhedrosis virus (OpMNPV)
          Length = 297

 Score =  136 bits (329), Expect = 6e-31
 Identities = 64/83 (77%), Positives = 76/83 (91%)
 Frame = +2

Query: 2   KRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTL 181
           KRV+CNKVRTVTE+  ++ KI+KTY+L EFDLKNLSSLES+E  K+KLALSKYMAM++TL
Sbjct: 2   KRVRCNKVRTVTEVKPNNAKIRKTYDLNEFDLKNLSSLESFENTKVKLALSKYMAMINTL 61

Query: 182 EMTQPLLEIFRNKADTRQIAAVV 250
           EMTQPLLE+FRN+ADTRQI AVV
Sbjct: 62  EMTQPLLEVFRNRADTRQIVAVV 84



 Score =  126 bits (304), Expect = 7e-28
 Identities = 58/95 (61%), Positives = 70/95 (73%)
 Frame = +1

Query: 256 TLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLS 435
           T+ F+HNRF+PLVT+FTNKMEFV TET +T IPGEPILFTEN+G LLC++DRPSIVKMLS
Sbjct: 87  TMGFVHNRFNPLVTHFTNKMEFVTTETAETIIPGEPILFTENDGALLCAIDRPSIVKMLS 146

Query: 436 REFDTEALVNFENDNCNVRIAKTFAPLSAKTRRAD 540
           REFD       +  N  V +AKT      K R ++
Sbjct: 147 REFDLSVAAEPQTSNREVLVAKTLVSNKRKRRSSN 181



 Score =  103 bits (247), Expect = 5e-21
 Identities = 46/60 (76%), Positives = 51/60 (85%)
 Frame = +2

Query: 581 LSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMSTK 760
           LSDF++TE+E TQYL LLLIVEHAYLHYYIFKNYG  EY KSL DHSLF NKLRS+ + K
Sbjct: 204 LSDFNVTEIETTQYLLLLLIVEHAYLHYYIFKNYGALEYSKSLMDHSLFVNKLRSSTNAK 263


>UniRef50_Q0ILA6 Cluster: Odv-e27; n=2; Nucleopolyhedrovirus|Rep:
           Odv-e27 - Leucania separata nuclear polyhedrosis virus
           (LsNPV)
          Length = 284

 Score =  127 bits (306), Expect = 4e-28
 Identities = 85/255 (33%), Positives = 132/255 (51%), Gaps = 8/255 (3%)
 Frame = +2

Query: 17  NKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQP 196
           NKVRTVTEIVN  +K+ K +EL E + KNL+SL SY+    ++ L+KY+AML  LE +Q 
Sbjct: 5   NKVRTVTEIVNGHDKLTKEFELDELNDKNLNSLVSYDNFNTRMVLAKYIAMLHMLETSQS 64

Query: 197 LLEIFRNKADTRQIAAVVFTH*LLYTIDSIHXXXXXXXXXXXXXXXXMTQAFPENPFCLQ 376
           L+  FR++   R+I  +V    L +     +                +  + P  PF   
Sbjct: 65  LIATFRDRNAAREIVQIVHNS-LAFVHQRANPMVNSFNRMEYVVTNEINHSIPGEPFFFA 123

Query: 377 KTRGCCCAPSTDRLSLKC*AASLTPRL**TLKTITATCG*PRRL---RL*AQK--HDAQI 541
            T     +  TD  +++C      P +  TL+    T      L   R+   K  +  + 
Sbjct: 124 TT----VSDDTDEETIRCYID--RPTIAKTLEKQIDTHVHVSELDATRIGQNKLANAFRG 177

Query: 542 DYESNKQPD---YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLT 712
             E  ++ D   YD + +D  ++EV+ T+YLTLLL++EHAY+HY + +NY V  Y ++L+
Sbjct: 178 SAEKRRRTDDYYYDDNFADIKLSEVDVTRYLTLLLMIEHAYIHYNVLRNYDVNNYTRTLS 237

Query: 713 DHSLFTNKLRSTMST 757
           DHS+F  K  +  ST
Sbjct: 238 DHSIFGQKAANFHST 252



 Score = 68.9 bits (161), Expect = 1e-10
 Identities = 59/194 (30%), Positives = 89/194 (45%), Gaps = 11/194 (5%)
 Frame = +1

Query: 256 TLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFT------ENEGVLLCSVDRPS 417
           +LAF+H R +P+V +F N+ME+VVT   + SIPGEP  F        +E  + C +DRP+
Sbjct: 85  SLAFVHQRANPMVNSF-NRMEYVVTNEINHSIPGEPFFFATTVSDDTDEETIRCYIDRPT 143

Query: 418 IVKMLSREFDTEALVNFENDNCNV---RIAKTFAPLSAKTRRAD*LRVK*TTRLRYGFER 588
           I K L ++ DT   V+ E D   +   ++A  F   + K RR D           Y  + 
Sbjct: 144 IAKTLEKQIDTHVHVS-ELDATRIGQNKLANAFRGSAEKRRRTDDY---------YYDDN 193

Query: 589 F*XXXXXXXXXXXXVADRRTCLFALLYF*KLRGV*ILQVAN--GPFAFYQQIAIDNEHKN 762
           F             +        A +++  LR   +          + + Q A +     
Sbjct: 194 FADIKLSEVDVTRYLTLLLMIEHAYIHYNVLRNYDVNNYTRTLSDHSIFGQKAANFHSTF 253

Query: 763 SNLLLSKFKFTIED 804
           +NLL+SKFKFTIED
Sbjct: 254 NNLLMSKFKFTIED 267


>UniRef50_Q462F3 Cluster: Orf13; n=14; Nucleopolyhedrovirus|Rep:
           Orf13 - Trichoplusia ni SNPV
          Length = 296

 Score =  120 bits (288), Expect = 6e-26
 Identities = 58/86 (67%), Positives = 72/86 (83%), Gaps = 3/86 (3%)
 Frame = +2

Query: 2   KRVKCN---KVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAML 172
           KR KC    KVRTVTEI+NSD+K+QK Y+L EFD+KNL+SLESY+TLKIKL + KYMAML
Sbjct: 2   KRFKCQSTPKVRTVTEIINSDDKLQKEYDLTEFDVKNLNSLESYDTLKIKLVIVKYMAML 61

Query: 173 STLEMTQPLLEIFRNKADTRQIAAVV 250
           +TL++TQPLL IFR++  TR+I  VV
Sbjct: 62  NTLQLTQPLLTIFRDRNATREIVTVV 87



 Score = 91.1 bits (216), Expect = 3e-17
 Identities = 44/96 (45%), Positives = 66/96 (68%), Gaps = 2/96 (2%)
 Frame = +1

Query: 256 TLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGV-LLCSVDRPSIVKML 432
           +L F+HNR +PLV NF  KMEF++ E+ + +IPGEPILF  NE   ++C +DR SIVKML
Sbjct: 90  SLGFVHNRVNPLVNNFNRKMEFIIVESKNLTIPGEPILFRHNENEDIVCIIDRVSIVKML 149

Query: 433 SREFDTEALV-NFENDNCNVRIAKTFAPLSAKTRRA 537
            ++FDT+  V N   ++  +++ K+F   S K R++
Sbjct: 150 EKQFDTDMNVSNIIQEHQKLKLIKSFT--SVKKRKS 183



 Score = 77.4 bits (182), Expect = 4e-13
 Identities = 33/62 (53%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
 Frame = +2

Query: 572 DMDLSDF-SITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRST 748
           D D S +  + E+EATQY TLL I+EHAY HYYI KNYG++ Y +SL DH++FT K + +
Sbjct: 186 DQDNSFYIKLNEIEATQYTTLLFIMEHAYGHYYILKNYGIYNYTQSLLDHTIFTQKYKPS 245

Query: 749 MS 754
           ++
Sbjct: 246 LN 247


>UniRef50_Q6QXM7 Cluster: ORF87; n=8; Granulovirus|Rep: ORF87 -
           Agrotis segetum granulosis virus (AsGV) (Agrotis
           segetumgranulovirus)
          Length = 298

 Score = 55.6 bits (128), Expect = 1e-06
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
 Frame = +1

Query: 253 YTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILF-----TENEGVLLCSVDRPS 417
           ++LAF++ +  P  T F + M F++T     +IPGEPI+F      +++  ++C VDRP 
Sbjct: 94  HSLAFVNTQMFPHSTRFVD-MRFIITSERKFAIPGEPIVFYRSINPDDDQTVVCFVDRPG 152

Query: 418 IVKMLSREFDTEALVNFENDNCNVRIAKTF 507
           I+++L +  D   +   END  N  + K F
Sbjct: 153 ILRVLEKPVDVNVVFE-ENDCKNEYMTKLF 181



 Score = 41.1 bits (92), Expect = 0.032
 Identities = 24/81 (29%), Positives = 43/81 (53%)
 Frame = +2

Query: 11  KCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMT 190
           K    RTVTEI +++    K Y++++   KN +     E  ++ L LSKY+AM+  L++ 
Sbjct: 14  KVENYRTVTEITDAENSYSKRYDVSDLVNKNEAYQRQQEKREMYLMLSKYVAMVLDLKLP 73

Query: 191 QPLLEIFRNKADTRQIAAVVF 253
             L  +F +      I ++V+
Sbjct: 74  D-LKILFGSNGTPEAILSLVY 93


>UniRef50_UPI00006CAFD7 Cluster: hypothetical protein TTHERM_00469180;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00469180 - Tetrahymena thermophila SB210
          Length = 3050

 Score = 40.7 bits (91), Expect = 0.042
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +1

Query: 289  LVTNFTNKMEFVVTETNDTSIPGEPILFTENE-GVLLCSVDRPSIVKMLSREFDTEALVN 465
            +VT+   +M  + ++++ + I G  I  ++NE  ++L S DR  I+     EFD +AL N
Sbjct: 1349 VVTSDLKQMSNINSQSHKSQIQGVKISISQNEKSIILFSFDRVGIISKFILEFDGQALAN 1408

Query: 466  FENDN 480
             +N+N
Sbjct: 1409 KQNEN 1413


>UniRef50_Q6JPA5 Cluster: Occlusion-derived virus envelope/capsid
           protein; n=3; Nucleopolyhedrovirus|Rep:
           Occlusion-derived virus envelope/capsid protein -
           Neodiprion lecontii NPV
          Length = 262

 Score = 39.1 bits (87), Expect = 0.13
 Identities = 21/64 (32%), Positives = 36/64 (56%)
 Frame = +2

Query: 578 DLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMST 757
           D+S   I E E  Q+  L +I+EH+++H YI  N    +   S+ DH+++   L   +S+
Sbjct: 175 DVSSDKINENEILQFFFLYIILEHSFVHLYIHVNENEKKNALSMIDHTVYF-ALGKGVSS 233

Query: 758 KTLI 769
           K L+
Sbjct: 234 KLLM 237


>UniRef50_Q1A4L9 Cluster: ODV-E27; n=1; Choristoneura occidentalis
           granulovirus|Rep: ODV-E27 - Choristoneura occidentalis
           granulovirus
          Length = 284

 Score = 39.1 bits (87), Expect = 0.13
 Identities = 21/81 (25%), Positives = 45/81 (55%)
 Frame = +2

Query: 11  KCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMT 190
           K +  RTVTEIV+S+   +K +++ + + KN + L+  +  ++ L ++KY   +   E+ 
Sbjct: 10  KVDSYRTVTEIVDSENFYKKEFDVTDLEYKNEAYLQKNKKRQLFLMVAKYFVEV-VKELN 68

Query: 191 QPLLEIFRNKADTRQIAAVVF 253
            P + +  +  +T +I   V+
Sbjct: 69  IPDIRVLFDSNETDKIFTFVY 89



 Score = 34.3 bits (75), Expect = 3.7
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
 Frame = +1

Query: 253 YTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTEN----EGVLLCSVDRPSI 420
           Y+LAFI+N+  P    F +   F +T+    ++  +PILF ++    +  + C VD  +I
Sbjct: 90  YSLAFINNQMLPHNKQFIDIKFFRITD-RKMAVATDPILFYKSLDSEDQTITCYVDTVNI 148

Query: 421 VKMLSREFDTEALVNFENDNCNVRIAK 501
            ++LS+  D +    FE D+    + K
Sbjct: 149 HRILSKFVDVD--TKFEPDDDKKEVFK 173


>UniRef50_Q1FFH9 Cluster: Abortive infection protein; n=1;
           Clostridium phytofermentans ISDg|Rep: Abortive infection
           protein - Clostridium phytofermentans ISDg
          Length = 399

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 536 QIDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAYLHY-YIFKNYGVFEYCKSL 709
           Q+D++   Q   +  LSD +  ++  T  LT LL    A+L Y  I KN G +EY KSL
Sbjct: 268 QVDFKQVLQESGNAVLSDTNFIDILRTYGLTALLGGVLAFLIYRKIAKNTGRYEYIKSL 326


>UniRef50_A6LV29 Cluster: Citrate transporter; n=1; Clostridium
           beijerinckii NCIMB 8052|Rep: Citrate transporter -
           Clostridium beijerinckii NCIMB 8052
          Length = 464

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -1

Query: 416 DGLSTEHNSTPSFSVNK-MGSPGM-LVSLVSVTTNSILLVKLVTSGWNL 276
           +G  T H + P F  N+ + S GM L+ LVSV   +++L K+V   WN+
Sbjct: 209 EGYGTGHKNEPEFDENEALPSFGMSLLPLVSVLIVTLVLQKVVFPNWNI 257


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,681,117
Number of Sequences: 1657284
Number of extensions: 14689807
Number of successful extensions: 39928
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 38386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39908
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)