Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120066.Seq
         (806 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.36 
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   7.7  
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)            28   7.7  

>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = -1

Query: 494 IRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVN-KMGSPGMLVSLVSVTTN 318
           +  L  S  +F +   +NS    LT++ L  + + T + S    +G   ++VS+ SVTTN
Sbjct: 737 VTPLLFSQERFERFEHNNSLEIKLTVNILQNQGSRTMTSSYYLAIGILSIIVSITSVTTN 796

Query: 317 SILLVKLV 294
           S++LV ++
Sbjct: 797 SLILVVII 804


>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 2   KRVKCNKVR-TVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 163
           KR    K++ T  E+V   +K +K + L + +LK L   E Y+ LK K  L KY+
Sbjct: 73  KRESKKKIKETERELV---QKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 328 TETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLS 435
           +E  D SI   P +   N G L+C VDR SI ++ S
Sbjct: 37  SELADVSIEPTPHILVGNGG-LMCGVDRESITRVFS 71


>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
          Length = 819

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = -1

Query: 494 IRTLQLSFSKFT--KASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTT 321
           I +++LS S  T   +S++ ++LS L+   LST   STPS S      P    +   V  
Sbjct: 183 IGSVELSSSAATPSSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPS---TTWKVFR 239

Query: 320 NSILLVKLVTSG 285
             +LL + V  G
Sbjct: 240 TKVLLERSVKEG 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,794,528
Number of Sequences: 59808
Number of extensions: 468718
Number of successful extensions: 1103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)