Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120065.Seq
         (756 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12270.1 68417.m01944 copper amine oxidase family protein con...    30   1.9  
At5g38130.1 68418.m04594 transferase family protein similar to a...    29   3.3  
At4g12290.1 68417.m01947 copper amine oxidase, putative similar ...    28   7.7  
At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger) fa...    28   7.7  
At2g44190.1 68415.m05497 expressed protein  contains Pfam profil...    28   7.7  

>At4g12270.1 68417.m01944 copper amine oxidase family protein
           contains similarity to copper amine oxidase [Cicer
           arietinum] gi|3819099|emb|CAA08855; contains Pfam
           domains PF02728: Copper amine oxidase, N3 domain and
           PF02727: Copper amine oxidase, N2 domain
          Length = 460

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 318 CFSVAEIKNYFMQPIDRLTIIPVLELDT 401
           CFS  +  N++M+PI+ LT++   +LDT
Sbjct: 236 CFSTQDTPNFYMRPIEGLTLL--FDLDT 261


>At5g38130.1 68418.m04594 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 462

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +2

Query: 608 LFEKSLLDDAEDSNNAANSDDTMLSESQAILKKLQIDIAEQTQLN 742
           L +K++LD    +NN  +++D  +S  QA++  L + I   + LN
Sbjct: 253 LSKKNILDLKAKANNEIDTNDLKISSLQAVVAYLWLSIIRHSGLN 297


>At4g12290.1 68417.m01947 copper amine oxidase, putative similar to
           copper amine oxidase [Cicer arietinum]
           gi|3819099|emb|CAA08855
          Length = 566

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 318 CFSVAEIKNYFMQPIDRLTIIPVLELDT 401
           CF      N++M+PI+ LTI+  ++LDT
Sbjct: 58  CFMTQGTPNFYMRPIEGLTIL--IDLDT 83


>At3g28620.1 68416.m03572 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 finger protein
           RHA2b [Arabidopsis thaliana] GI:3790571; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 211

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = +3

Query: 390 ELDTCKHQLCSMCXXXXXXXXXXPCPLCR--VESLH 491
           E+ TC H     C           CPLCR  V+ LH
Sbjct: 175 EMPTCSHYFHEPCLTEWLTRDNNSCPLCRKPVDKLH 210


>At2g44190.1 68415.m05497 expressed protein  contains Pfam profile:
           PF04484 family of unknown function (DUF566)
          Length = 474

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +2

Query: 470 VQG*KFAFQRLQHNRNVVDVIKCSVTSVAQWNKINDNFDAASL 598
           VQ  +   Q LQ  + V ++++    S+ QW  + D F  + L
Sbjct: 320 VQRKRIELQHLQRVKAVTEIVESQTPSLEQWAVLEDEFSTSLL 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,472,784
Number of Sequences: 28952
Number of extensions: 263385
Number of successful extensions: 689
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)