Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120064.Seq
         (451 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58739-3|AAB00610.1|  177|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr...    27   8.3  
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p...    27   8.3  

>U58739-3|AAB00610.1|  177|Caenorhabditis elegans Hypothetical
           protein F28C10.1 protein.
          Length = 177

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 319 YLSHVTVDNYKSESQTLYCQESVNKHGLYIPYYFVS 426
           +L H+ +   + E QT Y  ++ +++  YI YY +S
Sbjct: 127 FLDHMNLSISEFEDQTSYTSKTTSRNTKYIDYYKLS 162


>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
           protein Y42A5A.1 protein.
          Length = 1045

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 237 ILFKARFNLNSARDRYTVPWGFNGFINYIKITRLDL 130
           + FK+  NLN A   +  P+ F     Y+  T+L +
Sbjct: 255 VAFKSAINLNLAYGLFAAPYTFENETRYVVATQLQI 290


>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
            H05L14.2 protein.
          Length = 2162

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 341  TITRASHKHCIARNQ*INMVC 403
            T TR  H HCI+R   IN VC
Sbjct: 2125 TCTREYHYHCISRWLKINSVC 2145


>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
            protein H05L14.2 protein.
          Length = 2162

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 341  TITRASHKHCIARNQ*INMVC 403
            T TR  H HCI+R   IN VC
Sbjct: 2125 TCTREYHYHCISRWLKINSVC 2145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,009,158
Number of Sequences: 27780
Number of extensions: 159489
Number of successful extensions: 292
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)