Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120064.Seq
         (451 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41050.1 68418.m04990 expressed protein                             27   4.4  
At3g01990.1 68416.m00158 ACT domain-containing protein (ACR6) co...    27   5.9  

>At5g41050.1 68418.m04990 expressed protein
          Length = 172

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 418 NNMECTNHVYLLIPGNTMFVTRSCNCQQSHERDMITF*YRLTTV*LG 278
           +N   +NH Y  IPG  + +    N   S  R+MITF    TT  LG
Sbjct: 45  SNNSFSNHSYF-IPGVEVRIICRFNSASSRTREMITFSANRTTNELG 90


>At3g01990.1 68416.m00158 ACT domain-containing protein (ACR6)
           contains Pfam ACT domain PF01842; similar to uridylyl
           transferase-like proteins GB:AAD20075, GB:AAC00631
           [Arabidopsis thaliana]
          Length = 433

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 331 VTVDNYKSESQTLYCQESVNKHGLYIPYYFVST 429
           V +DN  S+  T+   +SVNKHG  +    V T
Sbjct: 18  VVIDNNASDDATVIQVDSVNKHGTLLEVVQVLT 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,149,622
Number of Sequences: 28952
Number of extensions: 137040
Number of successful extensions: 270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)