Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120063.Seq
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    25   0.79 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.8  

>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +3

Query: 594 TLPIMLSRKESNEIETASNNFFVSPYVSQILKYSESVKFPDNPPNKYVVDNLNLIVTKKV 773
           TLP +  RK         N F     V+  LK +   +F DN    ++  N + +   +V
Sbjct: 72  TLPSLPDRKFQTVTSIEGNTFKTETQVNDSLKVTRLYEFSDNELLVHISTNKSDVKATRV 131

Query: 774 RSR 782
             R
Sbjct: 132 YKR 134


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 363 FYAGFFNQIVRNHKSNFIKRYHK 295
           F  GFFN I    K N  +RYH+
Sbjct: 15  FIIGFFNAISGAIKGNDYQRYHQ 37


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 636  ETASNNFFVSPYVSQILKYSESVKFPDNPPNKYVVDN 746
            E++S++F    Y S + K SES   PD  P +Y++++
Sbjct: 952  ESSSSSF----YSSFLYKSSESSCNPDQKPTEYLLED 984


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 618 KESNEIETASNNFFVSPYVSQILKYSESVKFPDNPPNKY--VVDNLNLI 758
           KE   I + SNN+  S Y +    Y+    + +N  N Y  +  N+N I
Sbjct: 310 KEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYI 358


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 5/27 (18%), Positives = 17/27 (62%)
 Frame = +2

Query: 128 NDYNSNRFSDHMSETGYYMFVVKKSEV 208
           N+YN+N ++++  +  Y  +++   ++
Sbjct: 331 NNYNNNNYNNYNKKLYYKNYIINIEQI 357


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -2

Query: 303 YHKHTIIYHVIVVCIFDTTLLTYLANIISNGFTSLFL 193
           YHK   I  V    +FDT  +T+     +  FT   L
Sbjct: 156 YHKELQIELVREEILFDTVHVTFKLTFDNRAFTQASL 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,699
Number of Sequences: 438
Number of extensions: 4827
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)