Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120062.Seq
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
            H06O01.2 protein.
          Length = 1461

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 388  LFRNKPNFNISRLLNYAIVYFYKFTKSEP 302
            L + KP  NI +  NY  ++  KFT  EP
Sbjct: 1343 LIKKKPKTNIRKWYNYLWIFLCKFTLREP 1371


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
 Frame = -3

Query: 465  WPSCTETECHY---RRQKILHFTH*KH*SYLEISQILIFRDC*IMLLYIFINSQNPNPND 295
            W S +E E  +   R+  I+ F       +LE    ++ +      LY+ +N  N     
Sbjct: 2205 WESVSEGEPEFLLNRKSLIISFITKSSVIFLEECYFIVSQIYLFSKLYLTLNESNRQLFR 2264

Query: 294  SHSYSLIVFLRNIVFQVFNVFPLSLTFQNDL 202
             H +S   F + I F +   F +S++  +D+
Sbjct: 2265 VHRFSTFCFSQFIFFIILIKFRISISITDDI 2295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,235,147
Number of Sequences: 27780
Number of extensions: 237595
Number of successful extensions: 428
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)