Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120060.Seq
         (735 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    24   1.1  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    22   4.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   7.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   7.8  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/27 (25%), Positives = 12/27 (44%)
 Frame = -2

Query: 518 PVVERHCQWLWSLVP*ISLLQPWWPVW 438
           P+   HC WL+ +    +    +W  W
Sbjct: 93  PISTEHCDWLYGIFGHETSCTRYWTCW 119


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -1

Query: 381 LYTSGELMTKRMFFDFLIVTLSTPCTGLRPSLLIIFLAFFSPQTVSIC*RC 229
           ++TS  +      F      +S P    R  LL  + AFF    + IC +C
Sbjct: 240 MFTSHFIFIVVSIFYMSAYLISNPIMWDRVMLLTFWSAFFIVNVLYICNQC 290


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 438 PHRPPWLQQRDSRHQRP 488
           PH+ P +QQ+ ++ Q+P
Sbjct: 204 PHQQPPIQQQPNQGQQP 220


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 438 PHRPPWLQQRDSRHQRP 488
           PH+ P +QQ+ ++ Q+P
Sbjct: 206 PHQQPPIQQQPNQGQQP 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,373
Number of Sequences: 336
Number of extensions: 2866
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)