Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120060.Seq
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    73   4e-14
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   2.8  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   8.5  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 36/80 (45%), Positives = 54/80 (67%)
 Frame = +2

Query: 248 TVCGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKI 427
           TV   +KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P VYK+  ++ YIV G+  +
Sbjct: 20  TVVHAEKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTV 78

Query: 428 EDLSTQATMAAAERFKAPET 487
           ED++ QA      + +A ET
Sbjct: 79  EDMAAQARAFNESQKQATET 98



 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = +1

Query: 598 IVMSQANVSRAKAVRALKNNQSDIVNAIMELTM 696
           +VM+QANVSRAKAV ALK N SD+VNAIM LTM
Sbjct: 141 LVMAQANVSRAKAVTALKENNSDVVNAIMSLTM 173


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 51  QQYIKMPELTELDKATASMTEKRKEE 128
           ++YIK  +LTELD     +T+ RK +
Sbjct: 205 KEYIKKCQLTELDPTQQLLTQSRKNQ 230


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 475 LESLCCSHGGL 443
           LE  CCSHGGL
Sbjct: 656 LELFCCSHGGL 666


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,354
Number of Sequences: 5004
Number of extensions: 45205
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)