Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120059.Seq
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 149 5e-37
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 149 5e-37
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 147 1e-36
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.6
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 27 3.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.6
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 26 6.3
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 8.4
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 8.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 8.4
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 149 bits (360), Expect = 5e-37
Identities = 65/85 (76%), Positives = 76/85 (89%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDG
Sbjct: 85 GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144
Query: 438 RTIRYPDPLIKVNDSIQLDIATTKL 512
RTIRYPDPLIKVND+I+L++ T K+
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKI 169
Score = 107 bits (256), Expect = 2e-24
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 99.1 bits (236), Expect = 6e-22
Identities = 43/74 (58%), Positives = 59/74 (79%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
+I FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FAT+L+NVF+
Sbjct: 168 KIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFV 227
Query: 686 IGKGTKAYISLPRG 727
IG+ K++ISLP+G
Sbjct: 228 IGETGKSWISLPKG 241
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +1
Query: 181 KRILKIVKQRLIKVDGKVRTDPTYP 255
+ + I+ QRLIKVDGKVRTD T+P
Sbjct: 59 REVKAILMQRLIKVDGKVRTDSTFP 83
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 149 bits (360), Expect = 5e-37
Identities = 65/85 (76%), Positives = 76/85 (89%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDG
Sbjct: 85 GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144
Query: 438 RTIRYPDPLIKVNDSIQLDIATTKL 512
RTIRYPDPLIKVND+I+L++ T K+
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKI 169
Score = 107 bits (256), Expect = 2e-24
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 99 bits (238), Expect = 3e-22
Identities = 43/74 (58%), Positives = 59/74 (79%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
+I FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FAT+L+NVF+
Sbjct: 168 KIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFV 227
Query: 686 IGKGTKAYISLPRG 727
IG+ K++ISLP+G
Sbjct: 228 IGEAGKSWISLPKG 241
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1
Query: 181 KRILKIVKQRLIKVDGKVRTDPTYP 255
+ + I+ QRLI+VDGKVRTD T+P
Sbjct: 59 REVKAILMQRLIQVDGKVRTDSTFP 83
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 147 bits (357), Expect = 1e-36
Identities = 64/85 (75%), Positives = 76/85 (89%)
Frame = +3
Query: 258 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDG 437
GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDG
Sbjct: 85 GFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDG 144
Query: 438 RTIRYPDPLIKVNDSIQLDIATTKL 512
RTIRYPDPLIKVND+I+L++ T K+
Sbjct: 145 RTIRYPDPLIKVNDTIKLNLETNKI 169
Score = 107 bits (256), Expect = 2e-24
Identities = 45/60 (75%), Positives = 50/60 (83%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 99.1 bits (236), Expect = 6e-22
Identities = 43/74 (58%), Positives = 59/74 (79%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
+I FIKF++ M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FAT+L+NVF+
Sbjct: 168 KIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFV 227
Query: 686 IGKGTKAYISLPRG 727
IG+ K++ISLP+G
Sbjct: 228 IGETGKSWISLPKG 241
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +1
Query: 181 KRILKIVKQRLIKVDGKVRTDPTYP 255
+ + I+ QRLIKVDGKVRTD T+P
Sbjct: 59 REVKAILMQRLIKVDGKVRTDSTFP 83
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 467 QSQRFHPVRHCNYEIMDFIKFES 535
++++ HPVRH YE + FE+
Sbjct: 5 ENEKIHPVRHSKYEDKSKLPFET 27
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 524 KFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIV 628
KFE LC + G L R+G + E GS D+V
Sbjct: 318 KFELRRLCRVVGATPLARMGVPMPEEM--GSVDVV 350
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 267 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 443
+V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777
Query: 444 IR 449
++
Sbjct: 1778 LK 1779
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 271 LSQLRRLMNCFV*SMMLRADSQSTVSPLRRLSTSCVK 381
LS+++ L+NCF+ S + D + LR L +K
Sbjct: 424 LSRIKHLLNCFLNSSTVSLDVSMVLELLRDLKKKKIK 460
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 581 GTIVSRERHPGSFDIVHIKDSTGHTFATKLNN 676
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = -3
Query: 712 DVRLRALAD-----YEHVVQLRGEGVSRGVLDVHNVEGAGMSLAGHD 587
+ RLR+L + Y V+ EG LD+H+ A ++L GH+
Sbjct: 887 EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 362 SLLRGDTVDCESALNIID*TKQ 297
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,088
Number of Sequences: 5004
Number of extensions: 69759
Number of successful extensions: 197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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