Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120059.Seq
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 126 2e-29
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 123 2e-28
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 122 3e-28
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.94
04_03_1015 - 21734381-21736534 29 2.9
10_07_0015 + 11813465-11813479,11814342-11814422,11814842-118149... 29 3.8
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.8
12_02_0735 - 22636835-22639502,22639755-22640734 29 5.0
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 5.0
12_02_0468 + 19418785-19418901,19418909-19419037,19422212-194222... 28 6.6
08_02_1196 - 25190040-25190065,25190224-25190302,25190554-251906... 28 6.6
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 28 6.6
06_01_0083 - 659510-661267,661577-662384,662700-663646 28 6.6
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 6.6
08_02_1445 + 27149983-27150382,27151203-27151612,27151955-27152818 28 8.7
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 28 8.7
06_03_0124 - 16942492-16945032,16945478-16945572,16945966-169460... 28 8.7
04_04_0040 + 22322839-22324173 28 8.7
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 126 bits (304), Expect = 2e-29
Identities = 56/86 (65%), Positives = 69/86 (80%)
Frame = +3
Query: 255 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 434
AGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+D
Sbjct: 100 AGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTND 159
Query: 435 GRTIRYPDPLIKVNDSIQLDIATTKL 512
GRTIRYPDPLIK ND+I++D+ T K+
Sbjct: 160 GRTIRYPDPLIKANDTIKIDLETNKI 185
Score = 107 bits (256), Expect = 1e-23
Identities = 44/74 (59%), Positives = 60/74 (81%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
+I+DFIKF+ GN+ M+TGGRN GRVG I SRE+H GSF+ +H++D+ GH FAT++ NVF
Sbjct: 184 KIVDFIKFDVGNIVMVTGGRNTGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFT 243
Query: 686 IGKGTKAYISLPRG 727
IGK K ++SLP+G
Sbjct: 244 IGKERKPWVSLPKG 257
Score = 105 bits (253), Expect = 3e-23
Identities = 46/59 (77%), Positives = 51/59 (86%)
Frame = +2
Query: 11 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT E
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE 76
Score = 35.9 bits (79), Expect = 0.033
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 181 KRILKIVKQRLIKVDGKVRTDPTYP 255
+ ++ I+ QR + VDGKVRTD TYP
Sbjct: 75 REVISILMQRHVMVDGKVRTDKTYP 99
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 123 bits (296), Expect = 2e-28
Identities = 53/86 (61%), Positives = 68/86 (79%)
Frame = +3
Query: 255 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 434
AGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+D
Sbjct: 84 AGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYD 143
Query: 435 GRTIRYPDPLIKVNDSIQLDIATTKL 512
GRTIRYPDPLIK ND+I++D+ T K+
Sbjct: 144 GRTIRYPDPLIKANDTIKIDLETNKI 169
Score = 110 bits (264), Expect = 1e-24
Identities = 45/74 (60%), Positives = 61/74 (82%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
+I+DFIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FAT+L NVF
Sbjct: 168 KIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFT 227
Query: 686 IGKGTKAYISLPRG 727
IGKG K ++SLP+G
Sbjct: 228 IGKGNKPWVSLPKG 241
Score = 108 bits (260), Expect = 4e-24
Identities = 47/60 (78%), Positives = 53/60 (88%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Score = 35.5 bits (78), Expect = 0.044
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 181 KRILKIVKQRLIKVDGKVRTDPTYP 255
+ ++ I+ QR + VDGKVRTD TYP
Sbjct: 59 REVISILMQRHVLVDGKVRTDKTYP 83
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 122 bits (294), Expect = 3e-28
Identities = 52/86 (60%), Positives = 68/86 (79%)
Frame = +3
Query: 255 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 434
AGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+D
Sbjct: 84 AGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYD 143
Query: 435 GRTIRYPDPLIKVNDSIQLDIATTKL 512
GRTIRYPDP+IK ND+I++D+ T K+
Sbjct: 144 GRTIRYPDPIIKANDTIKIDLETNKI 169
Score = 109 bits (263), Expect = 2e-24
Identities = 45/74 (60%), Positives = 61/74 (82%)
Frame = +2
Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
+I+DFIKF+ GN+ M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FAT+L NVF
Sbjct: 168 KIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFT 227
Query: 686 IGKGTKAYISLPRG 727
IGKG K ++SLP+G
Sbjct: 228 IGKGNKPWVSLPKG 241
Score = 108 bits (260), Expect = 4e-24
Identities = 47/60 (78%), Positives = 53/60 (88%)
Frame = +2
Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Score = 35.5 bits (78), Expect = 0.044
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 181 KRILKIVKQRLIKVDGKVRTDPTYP 255
+ ++ I+ QR + VDGKVRTD TYP
Sbjct: 59 REVISILMQRHVLVDGKVRTDKTYP 83
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.94
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 152 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 51
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 364 STSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTIPSS 489
S+S V S+V+ LR+ T R +AA I THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>10_07_0015 +
11813465-11813479,11814342-11814422,11814842-11814951,
11815553-11815608,11816086-11816180,11817021-11817126,
11817261-11817577,11817666-11817848,11817976-11818173,
11819029-11819346,11819721-11819813
Length = 523
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 124 RVLAPGDFPEESSEVCFDRKRILKIVK 204
+VL G P+ESSEV D ILK+++
Sbjct: 468 KVLDEGSSPQESSEVTCDENAILKVME 494
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 165 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 37
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 696 PLPIMNTLFNFVAKVCPVESLMCTMSKEPGCL 601
PL NT+ + +A PVE L C +S + G L
Sbjct: 425 PLVTANTILSILAADYPVEKLACYLSDDGGAL 456
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 124 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 11
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>12_02_0468 +
19418785-19418901,19418909-19419037,19422212-19422249,
19422377-19422650,19422740-19423072
Length = 296
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = -3
Query: 616 GAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEVHNFVVAM----SNWMESLTLISGSG 452
GAG G DG RDH ++ + ++D + A NWM+ ++ G G
Sbjct: 18 GAGEGGGGGDGNGEDDAVLPRDHLEITKARVDATDTALEAFPDMPGNWMDDFRVV-GDG 75
>08_02_1196 -
25190040-25190065,25190224-25190302,25190554-25190646,
25190761-25190892,25191578-25191721,25192941-25193150,
25194915-25195406
Length = 391
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 663 VAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIHKFPD 532
V KV PV+SL C + C+S + + PVI+ + D
Sbjct: 165 VLKVLPVKSLSCKQIERRSCISLEAFIRDYFLCESPVILSGYID 208
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 684 MNTLFNFVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLR 562
+N +F V L+CT+ GC + +VP P++R
Sbjct: 213 LNAIFELFVWVNDSTVLVCTIPSSRGCPPKKPLVPFGPRIR 253
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 696 PLPIMNTLFNFVAKVCPVESLMCTMSKEPGCL 601
PL NT+ + +A PVE L C +S + G L
Sbjct: 414 PLVTANTILSILAADYPVEKLSCYVSDDGGAL 445
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 300 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 404
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>08_02_1445 + 27149983-27150382,27151203-27151612,27151955-27152818
Length = 557
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -3
Query: 598 AGHDGAHTPQVTASRDHTQVPR--LKLDEVHNFVVAMSNWMESLTLISGSG 452
A HDG V A R HT V R LK+ +V V +N ++ + + G
Sbjct: 81 ANHDGETPLYVAAERGHTDVVREILKVSDVQTAGVKANNSFDAFHIAAKQG 131
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 659 RRCVPWSP*CA--QCRRSRDVSRGTRWCPHAPSY 564
+RC+P S A +CR+SR S+ W P+ S+
Sbjct: 423 QRCLPESLRAAVQRCRQSRPASKVVEWAPYRHSF 456
>06_03_0124 -
16942492-16945032,16945478-16945572,16945966-16946076,
16946142-16946229
Length = 944
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 145 FPEESSEVCFDRKRILKIVKQRLIKVD--GKVRTDPTYPLDLWMLSQLRRLMNC 300
FP + ++C ++++ + ++ G R+ PTY + LWM+S L+ C
Sbjct: 95 FPIQIMQMCGWLLKVVRWENLNCVHMEAHGNRRSSPTYLVMLWMISVASLLITC 148
>04_04_0040 + 22322839-22324173
Length = 444
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +1
Query: 604 TSRL--LR-HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAA 720
TSRL LR H H HG + RH++ +R R H L A
Sbjct: 25 TSRLKGLRVHLTHVDAHGNYSRHQLLRRAARRSHHRMSRLVA 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,732,388
Number of Sequences: 37544
Number of extensions: 516546
Number of successful extensions: 1610
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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