Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120059.Seq
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             134   7e-32
SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   8.9  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  134 bits (324), Expect = 7e-32
 Identities = 61/86 (70%), Positives = 72/86 (83%)
 Frame = +3

Query: 255 AGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHD 434
           AGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD
Sbjct: 508 AGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHD 567

Query: 435 GRTIRYPDPLIKVNDSIQLDIATTKL 512
            RTIRYPDP IKVND++ +DI T K+
Sbjct: 568 ARTIRYPDPNIKVNDTVVIDIKTGKV 593



 Score =  123 bits (296), Expect = 2e-28
 Identities = 56/76 (73%), Positives = 63/76 (82%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484

Query: 188 S*KL*NNAS*RLMGKL 235
             K+      ++ GK+
Sbjct: 485 VKKIVKQRLIKIDGKV 500



 Score =  120 bits (288), Expect = 2e-27
 Identities = 46/74 (62%), Positives = 64/74 (86%)
 Frame = +2

Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
           +++D+IKF++GN+ M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FAT+L N+F+
Sbjct: 592 KVIDYIKFDTGNMAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFV 651

Query: 686 IGKGTKAYISLPRG 727
           IGKG K Y+SLP+G
Sbjct: 652 IGKGNKPYVSLPKG 665



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +1

Query: 181 KRILKIVKQRLIKVDGKVRTDPTYP 255
           + + KIVKQRLIK+DGKVRTD TYP
Sbjct: 483 EEVKKIVKQRLIKIDGKVRTDTTYP 507


>SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 437 PHH--PLSRPTYQSQRFHPVRHCNYEIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHP 610
           P H  PL + +Y S        C YE + F+ F +  LC  +    +  +G +VS++ +P
Sbjct: 205 PQHRAPLYKYSYSSFSNIMSSWCQYEALKFVSFPTQVLCKASKIIPVMLMGKLVSKKSYP 264


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 150 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPR 13
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPR 106


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,558,763
Number of Sequences: 59808
Number of extensions: 584374
Number of successful extensions: 1543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1539
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)