SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120059.Seq
         (729 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...   144   1e-34
BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...   144   1e-34
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...   144   1e-34
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...   144   1e-34
AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipp...    29   8.6  
AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,...    29   8.6  
AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,...    29   8.6  

>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score =  144 bits (348), Expect = 1e-34
 Identities = 63/90 (70%), Positives = 75/90 (83%)
 Frame = +3

Query: 243 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 422
           P   AG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G K VP+L
Sbjct: 80  PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139

Query: 423 VTHDGRTIRYPDPLIKVNDSIQLDIATTKL 512
           VTHDGRTIRYPDPLI  NDS+Q+DIA+ K+
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKI 169



 Score =  138 bits (334), Expect = 7e-33
 Identities = 61/74 (82%), Positives = 68/74 (91%)
 Frame = +2

Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
           +I D+IKF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FAT+L NVFI
Sbjct: 168 KITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFI 227

Query: 686 IGKGTKAYISLPRG 727
           IGKG K YISLP+G
Sbjct: 228 IGKGNKPYISLPKG 241



 Score =  117 bits (282), Expect = 1e-26
 Identities = 56/76 (73%), Positives = 62/76 (81%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+ FLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAE 60

Query: 188 S*KL*NNAS*RLMGKL 235
             K+      ++ GK+
Sbjct: 61  VTKIVMQRLVKVYGKV 76



 Score = 41.9 bits (94), Expect = 9e-04
 Identities = 18/23 (78%), Positives = 20/23 (86%)
 Frame = +1

Query: 187 ILKIVKQRLIKVDGKVRTDPTYP 255
           + KIV QRL+KV GKVRTDPTYP
Sbjct: 61  VTKIVMQRLVKVYGKVRTDPTYP 83


>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score =  144 bits (348), Expect = 1e-34
 Identities = 63/90 (70%), Positives = 75/90 (83%)
 Frame = +3

Query: 243 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 422
           P   AG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G K VP+L
Sbjct: 80  PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139

Query: 423 VTHDGRTIRYPDPLIKVNDSIQLDIATTKL 512
           VTHDGRTIRYPDPLI  NDS+Q+DIA+ K+
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKI 169



 Score =  138 bits (334), Expect = 7e-33
 Identities = 61/74 (82%), Positives = 68/74 (91%)
 Frame = +2

Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
           +I D+IKF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FAT+L NVFI
Sbjct: 168 KITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFI 227

Query: 686 IGKGTKAYISLPRG 727
           IGKG K YISLP+G
Sbjct: 228 IGKGNKPYISLPKG 241



 Score =  119 bits (286), Expect = 5e-27
 Identities = 55/64 (85%), Positives = 58/64 (90%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 188 S*KL 199
             K+
Sbjct: 61  VTKI 64



 Score = 45.6 bits (103), Expect = 7e-05
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 187 ILKIVKQRLIKVDGKVRTDPTYP 255
           + KIV QRL+KVDGKVRTDPTYP
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYP 83


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score =  144 bits (348), Expect = 1e-34
 Identities = 63/90 (70%), Positives = 75/90 (83%)
 Frame = +3

Query: 243 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 422
           P   AG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G K VP+L
Sbjct: 80  PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139

Query: 423 VTHDGRTIRYPDPLIKVNDSIQLDIATTKL 512
           VTHDGRTIRYPDPLI  NDS+Q+DIA+ K+
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKI 169



 Score =  138 bits (334), Expect = 7e-33
 Identities = 61/74 (82%), Positives = 68/74 (91%)
 Frame = +2

Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
           +I D+IKF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FAT+L NVFI
Sbjct: 168 KITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFI 227

Query: 686 IGKGTKAYISLPRG 727
           IGKG K YISLP+G
Sbjct: 228 IGKGNKPYISLPKG 241



 Score =  119 bits (286), Expect = 5e-27
 Identities = 55/64 (85%), Positives = 58/64 (90%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 188 S*KL 199
             K+
Sbjct: 61  VTKI 64



 Score = 45.6 bits (103), Expect = 7e-05
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 187 ILKIVKQRLIKVDGKVRTDPTYP 255
           + KIV QRL+KVDGKVRTDPTYP
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYP 83


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score =  144 bits (348), Expect = 1e-34
 Identities = 63/90 (70%), Positives = 75/90 (83%)
 Frame = +3

Query: 243 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 422
           P   AG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   G K VP+L
Sbjct: 80  PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139

Query: 423 VTHDGRTIRYPDPLIKVNDSIQLDIATTKL 512
           VTHDGRTIRYPDPLI  NDS+Q+DIA+ K+
Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKI 169



 Score =  138 bits (334), Expect = 7e-33
 Identities = 61/74 (82%), Positives = 68/74 (91%)
 Frame = +2

Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685
           +I D+IKF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FAT+L NVFI
Sbjct: 168 KITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFI 227

Query: 686 IGKGTKAYISLPRG 727
           IGKG K YISLP+G
Sbjct: 228 IGKGNKPYISLPKG 241



 Score =  119 bits (286), Expect = 5e-27
 Identities = 55/64 (85%), Positives = 58/64 (90%)
 Frame = +2

Query: 8   MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187
           MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1   MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60

Query: 188 S*KL 199
             K+
Sbjct: 61  VTKI 64



 Score = 45.6 bits (103), Expect = 7e-05
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +1

Query: 187 ILKIVKQRLIKVDGKVRTDPTYP 255
           + KIV QRL+KVDGKVRTDPTYP
Sbjct: 61  VTKIVMQRLVKVDGKVRTDPTYP 83


>AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipped-B
            protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -2

Query: 443  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 285
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


>AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,
            isoform F protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -2

Query: 443  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 285
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


>AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,
            isoform E protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -2

Query: 443  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 285
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,029,045
Number of Sequences: 53049
Number of extensions: 853931
Number of successful extensions: 2343
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2340
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -