BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120059.Seq (729 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D16257-1|BAA03786.1| 261|Drosophila melanogaster ribosomal prot... 144 1e-34 BT011369-1|AAR96161.1| 261|Drosophila melanogaster RE57333p pro... 144 1e-34 AE014296-2240|AAF49846.1| 261|Drosophila melanogaster CG11276-P... 144 1e-34 AE014296-2239|AAF49847.1| 261|Drosophila melanogaster CG11276-P... 144 1e-34 AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipp... 29 8.6 AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,... 29 8.6 AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,... 29 8.6 >D16257-1|BAA03786.1| 261|Drosophila melanogaster ribosomal protein S4 protein. Length = 261 Score = 144 bits (348), Expect = 1e-34 Identities = 63/90 (70%), Positives = 75/90 (83%) Frame = +3 Query: 243 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 422 P AG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+L Sbjct: 80 PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139 Query: 423 VTHDGRTIRYPDPLIKVNDSIQLDIATTKL 512 VTHDGRTIRYPDPLI NDS+Q+DIA+ K+ Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKI 169 Score = 138 bits (334), Expect = 7e-33 Identities = 61/74 (82%), Positives = 68/74 (91%) Frame = +2 Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685 +I D+IKF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FAT+L NVFI Sbjct: 168 KITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFI 227 Query: 686 IGKGTKAYISLPRG 727 IGKG K YISLP+G Sbjct: 228 IGKGNKPYISLPKG 241 Score = 117 bits (282), Expect = 1e-26 Identities = 56/76 (73%), Positives = 62/76 (81%) Frame = +2 Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187 MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+ FLRNRLKYAL G E Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAE 60 Query: 188 S*KL*NNAS*RLMGKL 235 K+ ++ GK+ Sbjct: 61 VTKIVMQRLVKVYGKV 76 Score = 41.9 bits (94), Expect = 9e-04 Identities = 18/23 (78%), Positives = 20/23 (86%) Frame = +1 Query: 187 ILKIVKQRLIKVDGKVRTDPTYP 255 + KIV QRL+KV GKVRTDPTYP Sbjct: 61 VTKIVMQRLVKVYGKVRTDPTYP 83 >BT011369-1|AAR96161.1| 261|Drosophila melanogaster RE57333p protein. Length = 261 Score = 144 bits (348), Expect = 1e-34 Identities = 63/90 (70%), Positives = 75/90 (83%) Frame = +3 Query: 243 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 422 P AG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+L Sbjct: 80 PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139 Query: 423 VTHDGRTIRYPDPLIKVNDSIQLDIATTKL 512 VTHDGRTIRYPDPLI NDS+Q+DIA+ K+ Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKI 169 Score = 138 bits (334), Expect = 7e-33 Identities = 61/74 (82%), Positives = 68/74 (91%) Frame = +2 Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685 +I D+IKF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FAT+L NVFI Sbjct: 168 KITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFI 227 Query: 686 IGKGTKAYISLPRG 727 IGKG K YISLP+G Sbjct: 228 IGKGNKPYISLPKG 241 Score = 119 bits (286), Expect = 5e-27 Identities = 55/64 (85%), Positives = 58/64 (90%) Frame = +2 Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187 MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60 Query: 188 S*KL 199 K+ Sbjct: 61 VTKI 64 Score = 45.6 bits (103), Expect = 7e-05 Identities = 19/23 (82%), Positives = 21/23 (91%) Frame = +1 Query: 187 ILKIVKQRLIKVDGKVRTDPTYP 255 + KIV QRL+KVDGKVRTDPTYP Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYP 83 >AE014296-2240|AAF49846.1| 261|Drosophila melanogaster CG11276-PB, isoform B protein. Length = 261 Score = 144 bits (348), Expect = 1e-34 Identities = 63/90 (70%), Positives = 75/90 (83%) Frame = +3 Query: 243 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 422 P AG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+L Sbjct: 80 PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139 Query: 423 VTHDGRTIRYPDPLIKVNDSIQLDIATTKL 512 VTHDGRTIRYPDPLI NDS+Q+DIA+ K+ Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKI 169 Score = 138 bits (334), Expect = 7e-33 Identities = 61/74 (82%), Positives = 68/74 (91%) Frame = +2 Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685 +I D+IKF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FAT+L NVFI Sbjct: 168 KITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFI 227 Query: 686 IGKGTKAYISLPRG 727 IGKG K YISLP+G Sbjct: 228 IGKGNKPYISLPKG 241 Score = 119 bits (286), Expect = 5e-27 Identities = 55/64 (85%), Positives = 58/64 (90%) Frame = +2 Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187 MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60 Query: 188 S*KL 199 K+ Sbjct: 61 VTKI 64 Score = 45.6 bits (103), Expect = 7e-05 Identities = 19/23 (82%), Positives = 21/23 (91%) Frame = +1 Query: 187 ILKIVKQRLIKVDGKVRTDPTYP 255 + KIV QRL+KVDGKVRTDPTYP Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYP 83 >AE014296-2239|AAF49847.1| 261|Drosophila melanogaster CG11276-PA, isoform A protein. Length = 261 Score = 144 bits (348), Expect = 1e-34 Identities = 63/90 (70%), Positives = 75/90 (83%) Frame = +3 Query: 243 PYLSAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL 422 P AG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+L Sbjct: 80 PTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFL 139 Query: 423 VTHDGRTIRYPDPLIKVNDSIQLDIATTKL 512 VTHDGRTIRYPDPLI NDS+Q+DIA+ K+ Sbjct: 140 VTHDGRTIRYPDPLIHANDSVQVDIASGKI 169 Score = 138 bits (334), Expect = 7e-33 Identities = 61/74 (82%), Positives = 68/74 (91%) Frame = +2 Query: 506 EIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATKLNNVFI 685 +I D+IKF+SGNLCMITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FAT+L NVFI Sbjct: 168 KITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFI 227 Query: 686 IGKGTKAYISLPRG 727 IGKG K YISLP+G Sbjct: 228 IGKGNKPYISLPKG 241 Score = 119 bits (286), Expect = 5e-27 Identities = 55/64 (85%), Positives = 58/64 (90%) Frame = +2 Query: 8 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 187 MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60 Query: 188 S*KL 199 K+ Sbjct: 61 VTKI 64 Score = 45.6 bits (103), Expect = 7e-05 Identities = 19/23 (82%), Positives = 21/23 (91%) Frame = +1 Query: 187 ILKIVKQRLIKVDGKVRTDPTYP 255 + KIV QRL+KVDGKVRTDPTYP Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYP 83 >AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipped-B protein. Length = 2077 Score = 28.7 bits (61), Expect = 8.6 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -2 Query: 443 GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 285 G ++RY + I +S R +LD+ +V + LR DTV+ +NIID Q I L Sbjct: 888 GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942 >AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF, isoform F protein. Length = 2077 Score = 28.7 bits (61), Expect = 8.6 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -2 Query: 443 GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 285 G ++RY + I +S R +LD+ +V + LR DTV+ +NIID Q I L Sbjct: 888 GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942 >AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE, isoform E protein. Length = 2077 Score = 28.7 bits (61), Expect = 8.6 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -2 Query: 443 GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 285 G ++RY + I +S R +LD+ +V + LR DTV+ +NIID Q I L Sbjct: 888 GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 37,029,045 Number of Sequences: 53049 Number of extensions: 853931 Number of successful extensions: 2343 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 2159 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2340 length of database: 24,988,368 effective HSP length: 83 effective length of database: 20,585,301 effective search space used: 3273062859 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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